Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BBD27_RS08295 Genome accession   NZ_CP016394
Coordinates   1577841..1579511 (+) Length   556 a.a.
NCBI ID   WP_002953185.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ND07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1572841..1584511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD27_RS08265 (BBD27_1640) - 1573740..1573985 (+) 246 WP_024704252.1 hypothetical protein -
  BBD27_RS08270 (BBD27_1641) xseA 1574174..1575514 (+) 1341 WP_011226129.1 exodeoxyribonuclease VII large subunit -
  BBD27_RS08275 (BBD27_1642) - 1575492..1575707 (+) 216 WP_002951008.1 exodeoxyribonuclease VII small subunit -
  BBD27_RS08280 (BBD27_1643) - 1575707..1576579 (+) 873 WP_024704251.1 polyprenyl synthetase family protein -
  BBD27_RS08285 (BBD27_1644) - 1576572..1577438 (+) 867 WP_011226127.1 TlyA family RNA methyltransferase -
  BBD27_RS08290 (BBD27_1645) - 1577386..1577832 (+) 447 WP_014621702.1 arginine repressor -
  BBD27_RS08295 (BBD27_1646) recN 1577841..1579511 (+) 1671 WP_002953185.1 DNA repair protein RecN Machinery gene
  BBD27_RS08300 (BBD27_1647) - 1579582..1580418 (+) 837 WP_011681251.1 DegV family protein -
  BBD27_RS08305 (BBD27_1648) - 1580411..1581286 (+) 876 WP_014608413.1 SGNH/GDSL hydrolase family protein -
  BBD27_RS08310 (BBD27_1649) - 1581279..1581848 (+) 570 WP_011681250.1 YpmS family protein -
  BBD27_RS08315 (BBD27_1650) - 1581985..1582260 (+) 276 WP_002950996.1 HU family DNA-binding protein -
  BBD27_RS08320 (BBD27_1651) - 1582319..1582519 (+) 201 WP_011681249.1 hypothetical protein -
  BBD27_RS08325 (BBD27_1652) - 1582584..1583522 (-) 939 WP_002950994.1 dihydroorotate oxidase -
  BBD27_RS08330 (BBD27_1653) - 1583777..1584469 (+) 693 WP_011226119.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62473.63 Da        Isoelectric Point: 4.5240

>NTDB_id=160032 BBD27_RS08295 WP_002953185.1 1577841..1579511(+) (recN) [Streptococcus thermophilus strain ND07]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSAPKAEIQGFFSIEQNPALVSLL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTILKAVGNFLVDIHGQHDQEELMRPALHISMLDAFGDKDFFQAKKE
YQEYFDRYRELRKAVLEKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEAYYVLEDVTKQLGDLVDNLDFDAGRLQEIEYRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQRERHQIANALESEIKTELCDLYMDKADFKVVFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVEEIAKMLAGDNLTDAALSQARALLKVDEPV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=160032 BBD27_RS08295 WP_002953185.1 1577841..1579511(+) (recN) [Streptococcus thermophilus strain ND07]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAAATTTCTCTTAACTTTGAAAATGGGATGACTGTTCT
TACCGGAGAGACTGGGGCAGGAAAATCCATTATCATTGATGCCATGAATCTTATGTTGGGGGCACGGGCATCTAGCGAGG
TTGTCCGTCATTCAGCCCCCAAGGCGGAGATTCAGGGCTTCTTTTCAATTGAACAAAATCCTGCTTTAGTTAGTCTCTTG
GAAGACAATGGGATTCCTGTTGAAGATGAGCTAATTATCCGCCGTGAAATTTTCCAAAATGGTCGAAGTGTTAGCCGTAT
CAACGGTCAAATGGTCAATTTAACGATTCTTAAAGCTGTCGGCAACTTTTTGGTAGATATCCATGGACAGCATGATCAAG
AAGAACTTATGAGACCTGCTCTTCACATAAGCATGCTTGATGCCTTTGGTGACAAGGATTTTTTTCAGGCAAAAAAAGAA
TATCAGGAATACTTTGATCGTTACCGTGAGCTAAGAAAAGCTGTTCTTGAAAAACAGAAAAACGAGAAAGAGCATAAGGC
TAGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGCCTCTCTAAAAACAGGTGAGGATCTAGCTTTGATGA
AGGAGCGAGATAAACTCCTCAATCATAAGCAGATTGCTGATACCTTAACGAATGCTTATGTTATGCTGGATAATGAAGAT
TTTTCAAGCTTATCAAATGTCCGTTCTGCCATGAATGATCTCCAATCTCTTGAAGAGTATGATTCTGATTATAAAGAACT
CTCTAATAATTTGTCAGAAGCCTACTATGTCCTTGAGGATGTCACTAAACAGTTAGGAGATCTTGTAGATAATTTAGATT
TTGATGCTGGGCGTTTGCAAGAGATTGAATACCGTTTAGATACGATTAATGCCATTACCCGTAAATATGGTGGAACTGTT
GATGATGTCTTAGATTATCTCGAAAATTCAAGTAAAGAATATAACCTATTGACTGGAAATTCTAGCTCTTCTGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACTTACTCGCGTCTGCAGAAACCTTGCAAAGGGAACGACATCAGATTGCAA
ACGCTCTTGAGTCAGAGATAAAGACTGAGTTATGTGATCTGTATATGGATAAGGCTGATTTTAAAGTTGTCTTTACTAAG
GGGAAATTTAACCGTGATGGTAATGAGCAAGTTGAGTTTTATATTTCAACCAATCCAGGTGAAGGATTTAAACCGCTTGT
TAAGGTTGCATCTGGTGGCGAACTGTCTCGACTTATGCTAGCCATTAAGTCAGCCTTTGCTCGAAAAGAAGATAAAACTA
GTATTGTCTTTGATGAGGTTGATACTGGAGTGTCGGGCCGTGTAGCCCAGGCTATCGCACAAAAGATTCATAAGATTGGA
AGTCATGGTCAGGTATTGGCTATCAGTCACCTTCCTCAAGTAATCGCTATTGCAGATTATCAATTCTTTATTTCTAAAGA
AAGTGATAACGAGACAACTGTATCTCGTGTTCGTCTCCTAACACCTGAAGAAAGAGTTGAGGAAATCGCCAAGATGCTTG
CAGGTGATAATTTGACTGATGCTGCCTTGAGTCAAGCTAGAGCTTTATTAAAAGTGGATGAACCTGTTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.45

Multiple sequence alignment