Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SE1039_RS08805 Genome accession   NZ_CP013114
Coordinates   1806528..1807244 (+) Length   238 a.a.
NCBI ID   WP_002507139.1    Uniprot ID   -
Organism   Staphylococcus equorum strain KS1039     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801528..1812244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE1039_RS08780 (SE1039_17300) - 1802079..1802708 (+) 630 WP_002507144.1 nitroreductase family protein -
  SE1039_RS08785 (SE1039_17310) - 1802941..1803726 (+) 786 WP_002507143.1 carbon-nitrogen family hydrolase -
  SE1039_RS08790 (SE1039_17320) - 1804487..1805056 (+) 570 WP_056935776.1 accessory gene regulator AgrB -
  SE1039_RS08795 (SE1039_17330) agrD 1805059..1805196 (+) 138 WP_056935777.1 cyclic lactone autoinducer peptide AgrD -
  SE1039_RS08800 (SE1039_17340) agrC 1805220..1806515 (+) 1296 WP_056935778.1 quorum-sensing sensor histidine kinase AgrC -
  SE1039_RS08805 (SE1039_17350) agrA 1806528..1807244 (+) 717 WP_002507139.1 quorum-sensing response regulator AgrA Regulator
  SE1039_RS08810 (SE1039_17360) - 1807281..1808249 (-) 969 WP_002507138.1 carbohydrate kinase family protein -
  SE1039_RS08815 (SE1039_17370) - 1808246..1809730 (-) 1485 WP_056935779.1 sucrose-6-phosphate hydrolase -
  SE1039_RS08820 (SE1039_17380) - 1809823..1810785 (-) 963 WP_056935780.1 LacI family DNA-binding transcriptional regulator -
  SE1039_RS08825 (SE1039_17390) - 1810929..1811156 (-) 228 WP_002507135.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27930.75 Da        Isoelectric Point: 4.9764

>NTDB_id=160018 SE1039_RS08805 WP_002507139.1 1806528..1807244(+) (agrA) [Staphylococcus equorum strain KS1039]
MKIFICEDDERQRENMISIINNYIMIEEKPMEIEVATADPYEVLERSKDLSDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESTVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELNQLDDRFFRCHNSFVVNRHNIESIDSKSRIVYFKNQEHCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=160018 SE1039_RS08805 WP_002507139.1 1806528..1807244(+) (agrA) [Staphylococcus equorum strain KS1039]
ATGAAGATATTCATATGTGAAGATGATGAAAGACAACGTGAGAATATGATTTCGATTATCAACAACTACATCATGATTGA
AGAGAAACCGATGGAAATTGAAGTTGCAACTGCCGATCCTTATGAAGTTTTAGAACGTTCTAAAGATTTAAGTGATATAG
GGTGTTACTTTTTAGATATACAATTGGAAGCCGACATTAACGGTATCAAGCTTGCTAGTGAAATTCGCAAGCACGATCCT
GTAGGTAATATCATTTTTGTTACAAGTCATAGCGAGCTTACATATCTTACTTTTGTTTATAAAGTAGCAGCGATGGACTT
TATTTTTAAAGATGATCCAGATGAATTAAAATCTAGAATCATTGATTGTTTAGAAACTTCAGAATCTAGGTTAAAATTAC
TTTCTAAAGAAAGCACTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCAGTATATGTTCAATATGATGATGTTATG
TTTTTTGAGTCCTCTACTAAATCTCATCGATTGATTGCGCACTTAGACAATAGACAAATTGAATTCTATGGTAACCTTAA
AGAACTTAACCAACTTGATGATAGATTCTTTAGATGTCATAACAGTTTCGTTGTTAACAGACATAATATTGAATCTATTG
ATTCAAAATCTCGCATTGTTTATTTCAAAAACCAAGAACATTGCTTTGCTTCAGTAAGAAATGTTAAAAAAATATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.555

100

0.866

Multiple sequence alignment