Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SE1039_RS01485 Genome accession   NZ_CP013114
Coordinates   322998..324374 (+) Length   458 a.a.
NCBI ID   WP_002508585.1    Uniprot ID   A0A1E5THJ8
Organism   Staphylococcus equorum strain KS1039     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 317998..329374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE1039_RS01465 (SE1039_02780) - 318148..318609 (+) 462 WP_002508589.1 CtsR family transcriptional regulator -
  SE1039_RS01470 (SE1039_02790) - 318626..319177 (+) 552 WP_056935245.1 UvrB/UvrC motif-containing protein -
  SE1039_RS01475 (SE1039_02800) - 319170..320180 (+) 1011 WP_021339720.1 protein arginine kinase -
  SE1039_RS01480 (SE1039_02810) - 320192..322654 (+) 2463 WP_056935246.1 ATP-dependent Clp protease ATP-binding subunit -
  SE1039_RS01485 (SE1039_02820) radA 322998..324374 (+) 1377 WP_002508585.1 DNA repair protein RadA Machinery gene
  SE1039_RS01490 (SE1039_02830) - 324448..325506 (+) 1059 WP_021339719.1 PIN/TRAM domain-containing protein -
  SE1039_RS01495 (SE1039_02840) gltX 325956..327413 (+) 1458 WP_002508583.1 glutamate--tRNA ligase -
  SE1039_RS01500 (SE1039_02850) cysE 327760..328401 (+) 642 WP_056936200.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50617.15 Da        Isoelectric Point: 7.2148

>NTDB_id=159997 SE1039_RS01485 WP_002508585.1 322998..324374(+) (radA) [Staphylococcus equorum strain KS1039]
MAKKKVVFECMACGYQSAKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDRDNVSKVQKLNEIKQETTPRVKTKSDEF
NRVLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQSHNVLYITGEESLNQTKLRAERLDEDSSELNVFAETDLEVIHE
TVKQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFE
GDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFN
NPRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIVATASSFKDLTVDGLDCFIGEVGLTG
EVRRVSRIEQRVQEAEKLGFKRIIIPESNIGGWQFPSDIKVIGVKSVHEALKYALTKQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=159997 SE1039_RS01485 WP_002508585.1 322998..324374(+) (radA) [Staphylococcus equorum strain KS1039]
GTGGCCAAGAAGAAAGTTGTTTTTGAATGCATGGCATGTGGCTATCAGTCCGCAAAATGGATGGGCAAATGTCCAAATTG
TGGTGGCTGGAACCAAATGGAAGAAATTGTTGAGCAAAAGGCGGCAAGTCCAAAACATGGCGTGCGCAGTCGTGATCGCG
ACAACGTTTCAAAAGTACAGAAGTTAAATGAAATTAAACAAGAAACGACACCACGTGTTAAAACCAAGTCAGACGAATTT
AATCGTGTGCTCGGCGGAGGTATCGTTAATGGTTCGCTCGTATTGATTGGTGGAGATCCTGGTATAGGGAAATCAACATT
ACTATTACAAATATGTGCGGCACTATCACAATCGCATAACGTCTTATACATAACAGGTGAGGAATCATTAAATCAAACTA
AGCTAAGAGCTGAAAGATTGGATGAAGATTCAAGCGAACTTAATGTATTTGCAGAAACTGATTTAGAAGTCATTCACGAA
ACAGTAAAACAATTAAAACCGGATTTACTTGTAGTTGACTCAATCCAAACGATATTCCATCCGGAAATTAGTTCAGCACC
AGGCTCAGTGTCTCAAGTAAGAGAAAGTACTCAAAGCTTAATGAACATTGCTAAACAAATGAATATTGCAACATTTATTG
TGGGACATGTAACAAAAGAAGGTCAAATTGCTGGTCCACGTTTATTAGAACACATGGTAGATACAGTACTTTATTTCGAA
GGTGACGAACACCATGCATATCGTATTTTGAGAGCGGTGAAAAATCGTTTTGGTTCTACAAATGAAATGGGAATTTTTGA
AATGAAACAAAGCGGATTGAAAGGTGTTAAAAACCCATCCGAGATGTTTTTAGAAGAACGTTCGACAAATGTGCCCGGCT
CGACTATTGTCTCTACAATGGAAGGCACGAGACCCTTACTCATAGAAGTTCAGGCACTTGTTACCCCAACGACTTTTAAT
AATCCTAGACGGATGGCAACAGGTATTGATCACAACCGTTTGAGTCTGTTGATGGCAGTCTTGGAGAAAAAAGAAAATTA
TTTACTGCAACAACAAGATGCGTATATTAAAGTTGCAGGTGGTGTAAGATTAACAGAACCTGCTGTTGATTTAGGTATCA
TTGTGGCAACTGCTTCAAGCTTTAAAGATCTAACAGTAGATGGTTTAGATTGCTTTATAGGAGAAGTTGGACTGACTGGA
GAAGTGAGACGCGTATCTCGAATAGAGCAACGTGTACAGGAAGCAGAGAAACTCGGATTTAAACGTATTATTATTCCAGA
ATCCAATATTGGCGGATGGCAATTCCCTAGTGATATTAAGGTCATTGGCGTGAAAAGTGTTCACGAAGCCTTAAAATACG
CTTTGACAAAACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5THJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

64.912

99.563

0.646
  radA Streptococcus pneumoniae Rx1

59.292

98.69

0.585
  radA Streptococcus pneumoniae D39

59.292

98.69

0.585
  radA Streptococcus pneumoniae R6

59.292

98.69

0.585
  radA Streptococcus pneumoniae TIGR4

59.292

98.69

0.585
  radA Streptococcus mitis SK321

59.292

98.69

0.585
  radA Streptococcus mitis NCTC 12261

59.292

98.69

0.585

Multiple sequence alignment