Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   BBD27_RS05180 Genome accession   NZ_CP016394
Coordinates   970659..970952 (+) Length   97 a.a.
NCBI ID   WP_024704238.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ND07     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 965659..975952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBD27_RS05155 (BBD27_1006) - 967610..967972 (+) 363 WP_014622006.1 DUF1033 family protein -
  BBD27_RS05160 (BBD27_1007) comGA/cglA/cilD 968053..968994 (+) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  BBD27_RS05165 (BBD27_1008) comGB 968876..969976 (+) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  BBD27_RS05170 (BBD27_1009) comGC 969973..970299 (+) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  BBD27_RS05175 (BBD27_1010) comGD 970259..970687 (+) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  BBD27_RS05180 comGE 970659..970952 (+) 294 WP_024704238.1 competence type IV pilus minor pilin ComGE Machinery gene
  BBD27_RS05185 (BBD27_1012) comGF 970936..971373 (+) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  BBD27_RS05190 (BBD27_1013) comGG 971351..971668 (+) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  BBD27_RS05195 (BBD27_1014) comGH 971713..972669 (+) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  BBD27_RS05200 (BBD27_1015) - 972725..973918 (+) 1194 WP_014608740.1 acetate kinase -
  BBD27_RS05205 - 974167..974365 (+) 199 Protein_966 helix-turn-helix transcriptional regulator -
  BBD27_RS11455 (BBD27_1017) - 974377..974652 (+) 276 WP_011681681.1 hypothetical protein -
  BBD27_RS11460 (BBD27_1018) - 974696..975034 (+) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  BBD27_RS05220 (BBD27_1019) - 975108..975551 (+) 444 WP_011681680.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10844.78 Da        Isoelectric Point: 10.6199

>NTDB_id=159993 BBD27_RS05180 WP_024704238.1 970659..970952(+) (comGE) [Streptococcus thermophilus strain ND07]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQK
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=159993 BBD27_RS05180 WP_024704238.1 970659..970952(+) (comGE) [Streptococcus thermophilus strain ND07]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGAAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

43.299

100

0.433
  comGE Streptococcus mutans UA159

43.299

100

0.433
  comGE Lactococcus lactis subsp. cremoris KW2

36.082

100

0.361