Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ASE18_RS02705 Genome accession   NZ_CP013112
Coordinates   546847..547476 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain YD786     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 541847..552476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASE18_RS02680 (ASE18_02680) ycbZ 542236..543996 (-) 1761 WP_000156526.1 AAA family ATPase -
  ASE18_RS02685 (ASE18_02685) matP 544182..544634 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ASE18_RS02690 (ASE18_02690) ompA 544710..545762 (-) 1053 WP_001361736.1 porin OmpA -
  ASE18_RS02700 (ASE18_02700) sulA 546119..546628 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ASE18_RS02705 (ASE18_02705) sxy/tfoX 546847..547476 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ASE18_RS02710 (ASE18_02710) yccS 547439..549601 (-) 2163 WP_000875023.1 YccS family putative transporter -
  ASE18_RS02715 (ASE18_02715) yccF 549611..550057 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ASE18_RS02720 (ASE18_02720) helD 550180..552234 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=159939 ASE18_RS02705 WP_000839153.1 546847..547476(+) (sxy/tfoX) [Escherichia coli strain YD786]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=159939 ASE18_RS02705 WP_000839153.1 546847..547476(+) (sxy/tfoX) [Escherichia coli strain YD786]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment