Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | BA058_RS19115 | Genome accession | NZ_CP016358 |
| Coordinates | 3922634..3923110 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186199.1 | Uniprot ID | Q83W77 |
| Organism | Escherichia coli strain K-15KW01 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 3917634..3928110
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA058_RS19100 (BA058_19100) | agn43 | 3917774..3920896 (+) | 3123 | WP_000820396.1 | autotransporter adhesin Ag43 | - |
| BA058_RS19105 (BA058_19105) | - | 3921223..3922041 (+) | 819 | WP_001234709.1 | DUF932 domain-containing protein | - |
| BA058_RS19110 (BA058_19110) | - | 3922133..3922618 (+) | 486 | WP_000213723.1 | antirestriction protein | - |
| BA058_RS19115 (BA058_19115) | radC | 3922634..3923110 (+) | 477 | WP_001186199.1 | RadC family protein | Machinery gene |
| BA058_RS19120 (BA058_19120) | - | 3923179..3923400 (+) | 222 | WP_000692353.1 | DUF987 domain-containing protein | - |
| BA058_RS19130 (BA058_19130) | cbeA | 3923563..3923931 (+) | 369 | WP_001278232.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| BA058_RS19135 (BA058_19135) | - | 3924021..3924398 (+) | 378 | WP_000854700.1 | TA system toxin CbtA family protein | - |
| BA058_RS19140 (BA058_19140) | - | 3924395..3924883 (+) | 489 | WP_000761726.1 | DUF5983 family protein | - |
| BA058_RS19145 (BA058_19145) | - | 3924895..3925092 (+) | 198 | WP_000839247.1 | DUF957 domain-containing protein | - |
| BA058_RS19150 (BA058_19150) | - | 3925177..3926031 (+) | 855 | WP_024174313.1 | DUF4942 domain-containing protein | - |
| BA058_RS19155 (BA058_19155) | istB | 3926294..3927040 (-) | 747 | WP_001016257.1 | IS21-like element ISEc12 family helper ATPase IstB | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17734.36 Da Isoelectric Point: 7.6152
>NTDB_id=159822 BA058_RS19115 WP_001186199.1 3922634..3923110(+) (radC) [Escherichia coli strain K-15KW01]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=159822 BA058_RS19115 WP_001186199.1 3922634..3923110(+) (radC) [Escherichia coli strain K-15KW01]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |