Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BA058_RS06370 Genome accession   NZ_CP016358
Coordinates   1319444..1319959 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain K-15KW01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314444..1324959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA058_RS06345 (BA058_06345) ygaZ 1314843..1315580 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  BA058_RS06350 (BA058_06350) ygaH 1315570..1315905 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  BA058_RS06355 (BA058_06355) emrR 1315996..1316526 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BA058_RS06360 (BA058_06360) emrA 1316653..1317825 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BA058_RS06365 (BA058_06365) emrB 1317842..1319380 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  BA058_RS06370 (BA058_06370) luxS 1319444..1319959 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  BA058_RS06375 (BA058_06375) gshA 1320109..1321665 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BA058_RS06380 (BA058_06380) yqaA 1321738..1322166 (-) 429 WP_001287454.1 YqaA family protein -
  BA058_RS06385 (BA058_06385) yqaB 1322163..1322729 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BA058_RS06415 (BA058_06415) csrA 1323784..1323969 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=159768 BA058_RS06370 WP_001130208.1 1319444..1319959(-) (luxS) [Escherichia coli strain K-15KW01]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=159768 BA058_RS06370 WP_001130208.1 1319444..1319959(-) (luxS) [Escherichia coli strain K-15KW01]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment