Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FORC37_RS14035 Genome accession   NZ_CP016321
Coordinates   2865746..2867950 (+) Length   734 a.a.
NCBI ID   WP_088428129.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_037     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2860746..2872950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC37_RS14015 (FORC37_2535) - 2861906..2863072 (-) 1167 WP_039542771.1 O-succinylhomoserine (thiol)-lyase -
  FORC37_RS14020 (FORC37_2536) metJ 2863284..2863601 (+) 318 WP_011079338.1 met regulon transcriptional regulator MetJ -
  FORC37_RS14025 (FORC37_2537) - 2863688..2864965 (-) 1278 WP_011079337.1 malic enzyme-like NAD(P)-binding protein -
  FORC37_RS14030 (FORC37_2538) rpmE 2865244..2865465 (-) 222 WP_011079336.1 50S ribosomal protein L31 -
  FORC37_RS14035 (FORC37_2539) priA 2865746..2867950 (+) 2205 WP_088428129.1 primosomal protein N' Machinery gene
  FORC37_RS14040 (FORC37_2540) cytR 2868179..2869186 (+) 1008 WP_011079334.1 DNA-binding transcriptional regulator CytR Regulator
  FORC37_RS14045 (FORC37_2541) - 2869294..2869851 (+) 558 WP_017419640.1 SPOR domain-containing protein -
  FORC37_RS14050 (FORC37_2542) hslV 2870001..2870555 (+) 555 WP_017419639.1 ATP-dependent protease subunit HslV -
  FORC37_RS14055 (FORC37_2543) hslU 2870583..2871914 (+) 1332 WP_088428130.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 82035.66 Da        Isoelectric Point: 8.6835

>NTDB_id=159656 FORC37_RS14035 WP_088428129.1 2865746..2867950(+) (priA) [Vibrio vulnificus strain FORC_037]
MRPSIARVALPVPLDKQFDYLVPGHLFPIIGGRVSVPFGRQTLIGIVTALVQESDFPREQLKPLKAVLDHRPIWPDSVYS
LLLWCSQFYQYPLGETLHNALPAALRKGKAANFATLQEWQLTELGKNQLMQGLNSRAIKQAKVLNMLANGPLPHQAFLDE
EVASTTLRTLEEKGWITCEEKTPQLTRWGNPIEHPVDKPKLNQEQAIAIATVNSQTDFGCYLLEGVTGSGKTEVYLNLIK
PILEQGKQALVLVPEIGLTPQTINRFRQRFDVPVAVIHSGLNDTERLNAWLSARDKAAGIVIGTRSALLIPFAQLGIIIV
DEEHDASYKQQDSLRYHARDVAVMRAAKEGIPIVLGSATPALETLHNALTGKYHHLSLTQRAGMAVPTTNKVLDVKGLYL
ESGLSAPLIAEMRRHLKAGNQVMLFLNRRGFSPALMCHECGWIAECKRCDAYYTYHQYSNEIRCHHCGSQQPIIHQCQGC
GSTQLVTVGVGTEQLENQLTTLFPDYKAIRIDRDSTRRKGSLESALEAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDV
DGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVILQTHHPEHTLLKALLTKDYRHFAQSALEERKIAQLPPFSFLTLF
RAEANHSEIVETFLRQVRMTLESHPLFDHSCLVLGPTPAPLAKRAGKYRWQLLLQTQHRSLMQKILSSTKPAIDLLPDAK
KVRWNLDIEPQDLS

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=159656 FORC37_RS14035 WP_088428129.1 2865746..2867950(+) (priA) [Vibrio vulnificus strain FORC_037]
ATGCGTCCATCTATTGCTCGTGTTGCGCTGCCAGTGCCACTCGATAAACAATTTGATTATCTCGTTCCTGGACACCTTTT
TCCGATCATTGGTGGTCGCGTGAGTGTGCCGTTTGGACGACAAACCTTGATTGGCATTGTCACCGCTTTAGTTCAAGAAT
CAGACTTTCCACGCGAGCAACTTAAACCCCTTAAAGCGGTGTTGGATCATCGTCCTATTTGGCCCGATTCCGTCTACAGT
TTATTACTTTGGTGTAGCCAGTTTTACCAATATCCCCTTGGTGAAACACTGCATAACGCCCTCCCTGCAGCACTAAGAAA
AGGTAAAGCGGCTAACTTTGCGACTCTACAAGAATGGCAGTTGACCGAGTTAGGCAAAAACCAGTTGATGCAAGGGCTAA
ACAGTCGCGCGATAAAGCAAGCGAAAGTATTGAATATGCTTGCTAATGGCCCTCTGCCTCACCAGGCCTTTCTAGATGAG
GAAGTGGCATCCACAACCTTGCGCACCTTGGAAGAAAAAGGCTGGATCACCTGTGAAGAAAAAACGCCACAGTTAACTCG
TTGGGGGAATCCGATTGAACATCCCGTCGATAAGCCGAAACTCAACCAAGAGCAAGCCATTGCCATTGCCACCGTAAACA
GCCAGACAGACTTTGGCTGTTATTTGTTGGAAGGGGTCACAGGCTCAGGCAAAACCGAAGTTTATCTCAACTTGATCAAA
CCCATTTTGGAACAAGGTAAACAGGCTCTGGTGTTGGTCCCTGAAATTGGTTTAACACCACAAACCATCAATCGTTTTCG
TCAACGGTTTGATGTGCCAGTCGCCGTCATCCATTCTGGTCTTAATGATACTGAACGTCTCAACGCTTGGCTTTCCGCAC
GAGACAAAGCGGCGGGCATTGTCATTGGTACACGCTCTGCACTACTGATCCCATTTGCCCAGCTAGGGATCATCATTGTC
GATGAAGAGCACGACGCTTCATACAAGCAACAAGATAGTCTGCGTTACCATGCTCGCGATGTGGCTGTGATGCGAGCGGC
AAAAGAAGGCATTCCAATTGTTCTTGGTTCAGCCACGCCCGCGTTAGAAACCTTACACAACGCACTTACGGGCAAATATC
ATCATCTCTCGCTGACCCAACGAGCAGGAATGGCCGTGCCAACCACCAATAAAGTGCTGGATGTCAAAGGGCTCTATCTG
GAAAGTGGCCTCTCCGCACCACTCATTGCTGAAATGCGTCGTCATTTAAAAGCGGGCAATCAGGTGATGCTATTTCTCAA
CCGTCGAGGCTTCTCCCCAGCGTTAATGTGCCATGAATGTGGTTGGATTGCCGAGTGCAAACGCTGCGATGCCTATTACA
CTTATCACCAGTACAGCAATGAAATCCGCTGTCACCACTGTGGCTCTCAACAACCTATTATTCACCAGTGCCAAGGTTGT
GGCTCTACACAACTGGTGACCGTTGGTGTCGGCACTGAGCAACTGGAAAACCAGTTGACGACCCTGTTTCCTGACTACAA
AGCAATTCGCATCGACCGCGATAGCACACGACGCAAAGGTAGCCTCGAAAGCGCTTTAGAAGCCATTCGCAAAGGGGAAT
ACCAAATTTTAATTGGCACGCAAATGCTGGCTAAAGGCCATCATTTCCCAGACGTGACGTTAGTGGCACTATTGGATGTT
GATGGGTCATTATACAGCAGTGACTTCCGAGCGTCCGAGCGATTGGCTCAGTTGTTTATTCAAGTCGCAGGACGAGCAGG
GCGTGCCAGCAAACCTGGCGAAGTGATCTTACAAACCCACCATCCAGAACACACTTTGCTCAAAGCTCTGTTGACCAAGG
ATTACCGGCACTTTGCGCAGTCTGCACTGGAAGAACGGAAAATTGCCCAACTTCCCCCGTTTAGTTTTCTAACGCTATTT
CGCGCAGAAGCCAATCACAGTGAAATCGTCGAAACATTCTTGCGCCAAGTGCGTATGACTCTCGAGTCTCATCCCTTGTT
TGATCACAGTTGTCTCGTGCTCGGCCCAACACCCGCCCCACTGGCCAAACGTGCGGGCAAATACCGCTGGCAGCTTCTGC
TTCAAACTCAACATCGTTCCTTGATGCAGAAAATACTCTCGAGCACGAAACCTGCTATCGATTTGTTACCAGATGCAAAA
AAAGTACGTTGGAATTTGGATATTGAGCCGCAGGATCTGAGTTAG

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-102)

DEAD/DEAH box helicase (DEAD)

(205-364)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-472)

Primosomal protein N C-terminal domain (PriA_C)

(633-730)

Helicase conserved C-terminal domain (Helicase_C)

(506-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

43.148

100

0.433