Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   AQ980_RS23445 Genome accession   NZ_CP013055
Coordinates   4580822..4581505 (-) Length   227 a.a.
NCBI ID   WP_000350716.1    Uniprot ID   A0A9W5VN71
Organism   Bacillus thuringiensis strain YWC2-8     
Function   degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 4575822..4586505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AQ980_RS23430 (AQ980_23845) pepF 4576002..4577828 (-) 1827 WP_000003348.1 oligoendopeptidase F Regulator
  AQ980_RS23435 (AQ980_23850) - 4577880..4579124 (-) 1245 WP_000628331.1 competence protein CoiA family protein -
  AQ980_RS23440 (AQ980_23855) - 4579205..4580749 (-) 1545 WP_000799197.1 cardiolipin synthase -
  AQ980_RS23445 (AQ980_23860) mecA 4580822..4581505 (-) 684 WP_000350716.1 adaptor protein MecA Regulator
  AQ980_RS23450 (AQ980_23865) - 4581851..4582525 (+) 675 WP_000362615.1 TerC family protein -
  AQ980_RS23455 (AQ980_23870) spx 4582575..4582970 (-) 396 WP_000258267.1 transcriptional regulator Spx -
  AQ980_RS23460 (AQ980_23880) - 4583564..4583767 (+) 204 WP_000559971.1 hypothetical protein -
  AQ980_RS23465 (AQ980_23885) - 4583798..4585444 (-) 1647 WP_000727248.1 peptide ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 227 a.a.        Molecular weight: 27009.07 Da        Isoelectric Point: 3.9986

>NTDB_id=159512 AQ980_RS23445 WP_000350716.1 4580822..4581505(-) (mecA) [Bacillus thuringiensis strain YWC2-8]
MDIERINDHTMKFFITYIDIEDRGFNREEIWYDRERSEELFWEMMDEARDHDDFFIDGPLWIQVQAVDKGIEVLVTKAEL
SKDGQKLELPIGVDKIIDIPLDEGIESLFQQELVEEVEEQTGTNFNEDGTFGFLIKFNDFEDVISLSHRLIFEDIKDELY
SFENRYYVYVEFDEVLHDEEEIDRILSIILEYGEESTLTIHRVSEYGKQIVKEHALETIRNNFPAKT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=159512 AQ980_RS23445 WP_000350716.1 4580822..4581505(-) (mecA) [Bacillus thuringiensis strain YWC2-8]
TTGGATATTGAAAGAATTAATGATCATACGATGAAATTTTTTATTACGTACATTGATATAGAGGATAGAGGATTTAATCG
TGAAGAGATTTGGTATGATCGCGAACGAAGTGAAGAGCTCTTTTGGGAGATGATGGACGAAGCTCGTGATCATGACGATT
TCTTTATTGATGGGCCGTTATGGATTCAAGTGCAAGCAGTCGATAAAGGGATTGAAGTACTTGTCACGAAAGCAGAGCTT
TCAAAGGACGGGCAAAAGCTGGAACTACCGATAGGGGTAGACAAAATTATAGATATTCCTCTAGATGAAGGCATCGAATC
ATTATTCCAGCAAGAATTAGTCGAAGAGGTAGAAGAACAAACAGGAACAAACTTTAATGAAGATGGTACGTTTGGCTTTT
TAATTAAGTTTAATGATTTTGAAGATGTCATTTCATTAAGTCATCGTCTTATCTTTGAAGATATAAAAGATGAGCTGTAT
TCATTTGAGAACCGCTATTATGTATATGTGGAATTCGATGAAGTGCTACATGATGAAGAAGAAATCGATCGTATTTTAAG
TATTATTTTAGAATATGGAGAAGAATCAACTTTAACAATTCATCGTGTAAGTGAGTATGGAAAACAAATTGTGAAAGAGC
ATGCGCTTGAAACGATTCGCAATAATTTTCCTGCTAAAACGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Bacillus subtilis subsp. subtilis str. 168

56.14

100

0.564


Multiple sequence alignment