Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AQ980_RS23005 Genome accession   NZ_CP013055
Coordinates   4498158..4498481 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain YWC2-8     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4493158..4503481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AQ980_RS22990 (AQ980_23390) - 4493672..4495039 (-) 1368 WP_000028382.1 aldehyde dehydrogenase -
  AQ980_RS22995 (AQ980_23395) inhA1 4495211..4497601 (-) 2391 WP_001035947.1 M6 family metalloprotease immune inhibitor InhA1 -
  AQ980_RS23000 (AQ980_23400) - 4497944..4498078 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  AQ980_RS23005 (AQ980_23405) sinR 4498158..4498481 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  AQ980_RS23010 (AQ980_23410) calY 4498555..4499148 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  AQ980_RS23015 (AQ980_23415) - 4499536..4500378 (-) 843 WP_015382237.1 DUF4047 domain-containing protein -
  AQ980_RS23020 (AQ980_23420) - 4500513..4501100 (-) 588 WP_000172854.1 CalY family protein -
  AQ980_RS23025 (AQ980_23425) - 4501161..4501730 (-) 570 WP_000767792.1 signal peptidase I -
  AQ980_RS23030 (AQ980_23430) - 4501922..4503208 (-) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=159510 AQ980_RS23005 WP_000578885.1 4498158..4498481(+) (sinR) [Bacillus thuringiensis strain YWC2-8]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=159510 AQ980_RS23005 WP_000578885.1 4498158..4498481(+) (sinR) [Bacillus thuringiensis strain YWC2-8]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment