Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB847_RS08775 Genome accession   NZ_CP013031
Coordinates   1793143..1793772 (+) Length   209 a.a.
NCBI ID   WP_000699018.1    Uniprot ID   A0A8S7S1H1
Organism   Escherichia coli strain H1827/12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788143..1798772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB847_RS08750 (AB847_08760) ycbZ 1788544..1790304 (-) 1761 WP_000156531.1 AAA family ATPase -
  AB847_RS08755 (AB847_08765) matP 1790490..1790942 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AB847_RS08760 (AB847_08770) ompA 1791018..1792058 (-) 1041 WP_000750416.1 porin OmpA -
  AB847_RS08770 (AB847_08780) sulA 1792415..1792924 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AB847_RS08775 (AB847_08785) sxy/tfoX 1793143..1793772 (+) 630 WP_000699018.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB847_RS08780 (AB847_08790) yccS 1793735..1795897 (-) 2163 WP_149025620.1 YccS family putative transporter -
  AB847_RS08785 (AB847_08795) yccF 1795907..1796353 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AB847_RS08790 (AB847_08800) helD 1796476..1798530 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=159400 AB847_RS08775 WP_000699018.1 1793143..1793772(+) (sxy/tfoX) [Escherichia coli strain H1827/12]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=159400 AB847_RS08775 WP_000699018.1 1793143..1793772(+) (sxy/tfoX) [Escherichia coli strain H1827/12]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment