Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   A9P90_RS24735 Genome accession   NZ_CP016214
Coordinates   5362149..5362763 (-) Length   204 a.a.
NCBI ID   WP_004353652.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA121617     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5357149..5367763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P90_RS24710 (A9P90_24710) - 5357606..5357869 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  A9P90_RS24715 (A9P90_24715) topA 5357960..5360566 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  A9P90_RS24720 (A9P90_24720) - 5360673..5361191 (+) 519 WP_003113979.1 DUF6586 family protein -
  A9P90_RS24725 (A9P90_24725) - 5361397..5361630 (+) 234 WP_003109483.1 hypothetical protein -
  A9P90_RS24730 (A9P90_24730) sulA 5361652..5362137 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  A9P90_RS24735 (A9P90_24735) dinR/lexA 5362149..5362763 (-) 615 WP_004353652.1 transcriptional repressor LexA Regulator
  A9P90_RS24740 (A9P90_24740) psrA 5362995..5363696 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  A9P90_RS24745 (A9P90_24745) nagZ 5363898..5364896 (+) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  A9P90_RS24750 (A9P90_24750) - 5364908..5365645 (+) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  A9P90_RS24755 (A9P90_24755) - 5365691..5366320 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22481.97 Da        Isoelectric Point: 6.2719

>NTDB_id=159343 A9P90_RS24735 WP_004353652.1 5362149..5362763(-) (dinR/lexA) [Pseudomonas aeruginosa strain PA121617]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPLAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=159343 A9P90_RS24735 WP_004353652.1 5362149..5362763(-) (dinR/lexA) [Pseudomonas aeruginosa strain PA121617]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCTTGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGTATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(83-196)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387