Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AR543_RS11035 Genome accession   NZ_CP013023
Coordinates   2576932..2577360 (+) Length   142 a.a.
NCBI ID   WP_060534353.1    Uniprot ID   -
Organism   Paenibacillus bovis strain BD3526     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2571932..2582360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR543_RS11005 (AR543_10930) - 2572094..2572762 (+) 669 WP_060534343.1 SGNH/GDSL hydrolase family protein -
  AR543_RS11010 (AR543_10935) - 2572787..2573683 (+) 897 WP_060534345.1 SMP-30/gluconolactonase/LRE family protein -
  AR543_RS11015 (AR543_10940) - 2573854..2574267 (+) 414 WP_060534347.1 SMI1/KNR4 family protein -
  AR543_RS11020 (AR543_10945) - 2574428..2575609 (+) 1182 WP_060534349.1 acyl-CoA dehydrogenase family protein -
  AR543_RS11025 (AR543_10950) - 2575652..2576209 (+) 558 WP_060534350.1 SMI1/KNR4 family protein -
  AR543_RS11030 - 2576384..2576560 (-) 177 WP_064505577.1 YjfB family protein -
  AR543_RS11035 (AR543_10955) nucA/comI 2576932..2577360 (+) 429 WP_060534353.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AR543_RS11040 (AR543_10960) - 2577480..2581235 (-) 3756 WP_060534355.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15877.96 Da        Isoelectric Point: 4.9431

>NTDB_id=159331 AR543_RS11035 WP_060534353.1 2576932..2577360(+) (nucA/comI) [Paenibacillus bovis strain BD3526]
MKKVWMTVTMLVMMMTLPVVLQGEAQIHKVYAAAAYDYTLNFPSDRYPETADHIRDAIADGHSDVCTIDRTGADERREDS
LRGVPTKSGYDRDEWPMAMCLEGGTGADIRYVIPSDNRGAGSWVGNRLENYPDGTKVKFIVN

Nucleotide


Download         Length: 429 bp        

>NTDB_id=159331 AR543_RS11035 WP_060534353.1 2576932..2577360(+) (nucA/comI) [Paenibacillus bovis strain BD3526]
ATGAAAAAAGTATGGATGACGGTAACAATGCTGGTGATGATGATGACATTGCCGGTAGTGCTTCAAGGCGAAGCACAAAT
ACATAAGGTGTATGCGGCGGCAGCATACGATTATACACTGAATTTTCCGTCCGATCGTTATCCCGAGACTGCTGATCATA
TTCGTGATGCGATTGCAGACGGCCATTCAGATGTATGCACAATCGACCGGACAGGCGCAGACGAGCGTCGTGAAGATTCC
CTGCGAGGCGTACCGACCAAATCCGGCTATGACCGTGACGAGTGGCCGATGGCGATGTGCCTGGAAGGTGGTACCGGTGC
AGATATCCGCTATGTGATCCCTTCAGATAATCGCGGTGCCGGCTCTTGGGTAGGCAACCGACTTGAGAATTACCCGGACG
GTACAAAAGTAAAATTTATCGTGAACTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.826

80.986

0.549

Multiple sequence alignment