Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BAY41_RS10665 Genome accession   NZ_CP016182
Coordinates   2141479..2142906 (-) Length   475 a.a.
NCBI ID   WP_000980568.1    Uniprot ID   B7L9N7
Organism   Escherichia coli strain EC590     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2136479..2147906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAY41_RS10640 (BAY41_10325) yeeZ 2136534..2137358 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  BAY41_RS10645 (BAY41_10330) yeeY 2137404..2138333 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  BAY41_RS24020 yoeI 2138548..2138610 (+) 63 WP_010723108.1 membrane protein YoeI -
  BAY41_RS10650 (BAY41_10335) plaP 2138600..2139958 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BAY41_RS10655 (BAY41_10340) tsuA 2140137..2141195 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  BAY41_RS10660 (BAY41_10345) tsuB 2141209..2141436 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BAY41_RS10665 (BAY41_10350) sbcB 2141479..2142906 (-) 1428 WP_000980568.1 exodeoxyribonuclease I Machinery gene
  BAY41_RS10670 (BAY41_10355) dacD 2143115..2144281 (+) 1167 WP_000830163.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BAY41_RS10675 (BAY41_10360) sbmC 2144400..2144873 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  BAY41_RS10680 (BAY41_10365) yeeA 2145071..2146129 (+) 1059 WP_001200905.1 FUSC family protein -
  BAY41_RS10685 (BAY41_10370) tmaR 2146301..2146630 (+) 330 WP_000450409.1 DUF496 family protein -
  BAY41_RS10690 (BAY41_10375) - 2146731..2146913 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BAY41_RS10695 (BAY41_10380) - 2146967..2147113 (+) 147 Protein_1965 transposase domain-containing protein -
  BAY41_RS24025 (BAY41_10385) - 2147402..2147482 (-) 81 Protein_1966 hypothetical protein -
  BAY41_RS10700 (BAY41_10390) yeeW 2147528..2147722 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4700

>NTDB_id=159227 BAY41_RS10665 WP_000980568.1 2141479..2142906(-) (sbcB) [Escherichia coli strain EC590]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=159227 BAY41_RS10665 WP_000980568.1 2141479..2142906(-) (sbcB) [Escherichia coli strain EC590]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L9N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583