Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   A9494_RS00215 Genome accession   NZ_CP016175
Coordinates   28574..29356 (+) Length   260 a.a.
NCBI ID   WP_002935335.1    Uniprot ID   -
Organism   Streptococcus suis strain LSM102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23574..34356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9494_RS00195 (A9494_00190) mreD 24395..24910 (+) 516 WP_002935339.1 rod shape-determining protein MreD -
  A9494_RS00200 (A9494_00195) pcsB 24995..26251 (+) 1257 WP_012774880.1 peptidoglycan hydrolase PcsB -
  A9494_RS00205 (A9494_00200) - 26354..27322 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  A9494_RS00210 (A9494_00205) - 27409..28587 (+) 1179 WP_011922532.1 pyridoxal phosphate-dependent aminotransferase -
  A9494_RS00215 (A9494_00210) recO 28574..29356 (+) 783 WP_002935335.1 DNA repair protein RecO Machinery gene
  A9494_RS00220 (A9494_00215) plsX 29353..30360 (+) 1008 WP_011921644.1 phosphate acyltransferase PlsX -
  A9494_RS00225 (A9494_00220) - 30353..30601 (+) 249 WP_011921645.1 phosphopantetheine-binding protein -
  A9494_RS00230 (A9494_00225) purC 30719..31426 (+) 708 WP_011921646.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30486.97 Da        Isoelectric Point: 5.4193

>NTDB_id=159084 A9494_RS00215 WP_002935335.1 28574..29356(+) (recO) [Streptococcus suis strain LSM102]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRFFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=159084 A9494_RS00215 WP_002935335.1 28574..29356(+) (recO) [Streptococcus suis strain LSM102]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGTAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGGCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCAAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGTTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.721

96.538

0.673