Detailed information NTG0159051

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NH62_RS15985
• Genome accession: NZ_CP012998
• Coordinates: 2319837..2320844 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain 2012Env-9
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2314837..2325844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NH62_RS15960 (NH62_22095)	rraA	2315412..2315927 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
NH62_RS15965 (NH62_22096)	-	2316002..2316919 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NH62_RS15970 (NH62_22097)	hslU	2317023..2318354 (-)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
NH62_RS15975 (NH62_22098)	hslV	2318420..2318977 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
NH62_RS15980 (NH62_22099)	-	2319114..2319665 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
NH62_RS15985 (NH62_22100)	cytR	2319837..2320844 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
NH62_RS15990 (NH62_22101)	priA	2321150..2323354 (-)	2205	WP_001247858.1	primosomal protein N'	-
NH62_RS15995 (NH62_22102)	rpmE	2323609..2323827 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
NH62_RS16000 (NH62_22103)	-	2324135..2325412 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
NH62_RS16005 (NH62_22104)	metJ	2325523..2325840 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=159051 NH62_RS15985 WP_000224452.1 2319837..2320844(-) (cytR) [Vibrio cholerae strain 2012Env-9]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=159051 NH62_RS15985 WP_000224452.1 2319837..2320844(-) (cytR) [Vibrio cholerae strain 2012Env-9]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCTGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAGGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904