Detailed information NTG0159022

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NH62_RS05680
• Genome accession: NZ_CP012998
• Coordinates: 55406..56413 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116736.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 2012Env-9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 50406..61413

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NH62_RS05645 (NH62_20050)	ftsB	50457..50741 (+)	285	WP_001263189.1	cell division protein FtsB	-
NH62_RS05650 (NH62_20051)	ispD	50738..51436 (+)	699	WP_001061949.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NH62_RS05655 (NH62_20052)	ispF	51433..51909 (+)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NH62_RS05660 (NH62_20053)	truD	51939..53024 (+)	1086	WP_000129765.1	tRNA pseudouridine(13) synthase TruD	-
NH62_RS05665 (NH62_20054)	surE	53026..53778 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
NH62_RS05670 (NH62_20055)	-	53771..54397 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NH62_RS05675 (NH62_20056)	nlpD	54397..55332 (+)	936	WP_033935855.1	murein hydrolase activator NlpD	-
NH62_RS05680 (NH62_20057)	rpoS	55406..56413 (+)	1008	WP_000116736.1	RNA polymerase sigma factor RpoS	Regulator
NH62_RS05685 (NH62_20058)	mutS	56507..59095 (-)	2589	WP_001995056.1	DNA mismatch repair protein MutS	-
NH62_RS05690 (NH62_20059)	cysM	59364..60251 (-)	888	WP_001279364.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38477.34 Da
• Isoelectric Point: 4.3648

>NTDB_id=159022 NH62_RS05680 WP_000116736.1 55406..56413(+) (rpoS) [Vibrio cholerae strain 2012Env-9]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDS

Nucleotide

• Length: 1008 bp

>NTDB_id=159022 NH62_RS05680 WP_000116736.1 55406..56413(+) (rpoS) [Vibrio cholerae strain 2012Env-9]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGACGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACACCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAGCTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994