Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxQ   Type   Regulator
Locus tag   NH62_RS03435 Genome accession   NZ_CP012997
Coordinates   774869..777442 (-) Length   857 a.a.
NCBI ID   WP_001026305.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2012Env-9     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 769869..782442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH62_RS03400 (NH62_10673) - 770155..771135 (+) 981 WP_000019370.1 IS5-like element ISVch5 family transposase -
  NH62_RS03405 (NH62_10674) - 771260..771898 (-) 639 WP_000632638.1 AAA family ATPase -
  NH62_RS03410 (NH62_10675) - 772303..772608 (-) 306 WP_001181136.1 hypothetical protein -
  NH62_RS03415 (NH62_10676) - 772813..773211 (+) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -
  NH62_RS03425 (NH62_10677) - 773450..773968 (+) 519 WP_000914961.1 hypothetical protein -
  NH62_RS03430 (NH62_10678) - 774212..774877 (+) 666 WP_000268198.1 PilZ domain-containing protein -
  NH62_RS03435 (NH62_10679) luxQ 774869..777442 (-) 2574 WP_001026305.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  NH62_RS03440 (NH62_10680) luxP 777460..778554 (-) 1095 WP_000823675.1 substrate-binding domain-containing protein Regulator
  NH62_RS03445 (NH62_10681) traF 778766..779926 (-) 1161 WP_001025871.1 conjugal transfer protein TraF -
  NH62_RS03450 (NH62_10682) - 780028..780333 (-) 306 WP_000429066.1 GIY-YIG nuclease family protein -
  NH62_RS03455 (NH62_10683) - 780350..781000 (-) 651 WP_001025631.1 YceH family protein -
  NH62_RS03460 (NH62_10684) - 781042..781239 (-) 198 WP_001246071.1 hypothetical protein -
  NH62_RS03465 (NH62_10685) - 781427..781747 (+) 321 WP_001089529.1 DUF496 family protein -
  NH62_RS20360 (NH62_10686) - 781747..781896 (+) 150 WP_000611727.1 hypothetical protein -
  NH62_RS03475 (NH62_10687) - 782160..782411 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 857 a.a.        Molecular weight: 96989.80 Da        Isoelectric Point: 6.0197

>NTDB_id=159017 NH62_RS03435 WP_001026305.1 774869..777442(-) (luxQ) [Vibrio cholerae strain 2012Env-9]
MNIRPSQIKHKQRIASFITHAVVVVMGVLIVSVLFQSYQISSRLMAQEGQRTSVQTSSLIQSLFDFRLAALRIHQDSTAK
NASLINALVSRDSSRLDEFFSSVDELELSNAPDLRFISSHDNILWDDGNASFYGIAQQELNKLIRRVAISGNWHLVQTPS
EGKSVHILMRRSSLIEAGTGQVVGYLYVGIVLNDNFALLENIRSGSNSENLVLAVDTTPLVSTLKGNEPYSLDYVVHSAK
DAMRDSFIVGQTFLEVESVPTYLCVYSIQTNQNVLTLRDNFYFWMAFALISMIGVSIASRWWLQKRIQREIETLMNYTHK
LMDLDTKSEFIGSKIYEFDYFGRTLEQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQNHFL
FEILERQLLPTITNAAQGNNPSDVTTEVDGRVYRWNLSPIMVEGQIISIITQGQDITTIAEAEKQSQAARREAEESARVR
AEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVC
AIDRIYRPLCNEKGLELMVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGI
GIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQLPIELVERPDAPQQLLPAP
DPQPLFDKTLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVETTRTIKKVLH
LPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKALEHFKHHHGQKNAGLN

Nucleotide


Download         Length: 2574 bp        

>NTDB_id=159017 NH62_RS03435 WP_001026305.1 774869..777442(-) (luxQ) [Vibrio cholerae strain 2012Env-9]
TTGAACATTCGACCTAGCCAAATCAAGCATAAACAGCGCATCGCTTCTTTTATCACCCATGCTGTCGTGGTGGTGATGGG
CGTTCTGATCGTCAGTGTATTATTCCAAAGTTACCAGATCAGTAGCCGCTTGATGGCTCAAGAAGGACAACGCACTTCAG
TTCAAACCTCTAGCTTGATTCAAAGTTTGTTTGATTTTCGTCTTGCGGCACTGCGAATTCACCAAGACAGCACAGCCAAG
AACGCCAGTTTAATCAATGCACTTGTCAGCCGAGATTCGAGTCGGCTGGATGAATTCTTTTCCAGTGTCGATGAACTTGA
ACTCTCTAATGCGCCAGATCTGCGTTTTATCTCCAGTCACGACAACATCTTGTGGGATGATGGCAACGCCTCTTTTTACG
GCATTGCCCAGCAAGAGCTGAATAAGCTTATCCGCAGAGTGGCGATCAGTGGCAATTGGCACTTGGTTCAAACGCCCAGC
GAGGGAAAATCAGTCCATATTTTGATGCGTCGTTCATCACTGATTGAAGCGGGAACCGGGCAGGTTGTTGGGTATCTGTA
TGTAGGCATCGTACTCAATGATAACTTTGCGCTGTTGGAAAATATCCGCAGTGGCAGTAACTCAGAAAACCTAGTCCTTG
CCGTCGATACTACGCCGCTGGTTTCTACCTTGAAAGGCAATGAACCTTATTCGCTGGACTATGTGGTGCACAGCGCCAAA
GATGCTATGCGCGACAGCTTTATTGTTGGGCAAACCTTCTTAGAAGTGGAAAGTGTACCGACCTATCTGTGCGTCTACTC
GATTCAGACCAACCAAAATGTGCTCACCCTGCGGGATAATTTCTATTTTTGGATGGCGTTTGCGCTGATCAGTATGATCG
GTGTTTCCATAGCGTCACGCTGGTGGCTACAAAAACGCATTCAGCGTGAAATTGAAACCTTGATGAATTACACCCATAAA
TTGATGGATCTGGATACGAAAAGTGAGTTTATCGGTTCAAAAATTTATGAGTTCGACTATTTTGGGCGAACGTTGGAACA
ATCATTCCGTCGTCTCGCCAATAAAGAAAAGCAGTTTGAAGATCTGTTTAACTTTGCGCTCTCACCGACCATGCTTTGGA
ATACCTCTGGTCGGCTGATCCGCATGAACCCCTCAGCGCAAATCCAGTTTTTGCGCGAAGATGCGCAAAACCATTTCTTA
TTTGAGATTCTTGAACGTCAACTATTACCGACCATCACTAATGCGGCACAGGGCAATAATCCGAGTGACGTCACAACCGA
AGTGGATGGTCGCGTGTACCGCTGGAACCTTTCACCGATCATGGTGGAAGGGCAGATCATTTCCATCATTACTCAAGGGC
AAGATATCACCACCATCGCGGAAGCGGAGAAGCAAAGCCAAGCCGCAAGGCGCGAAGCGGAAGAGTCGGCAAGGGTCAGG
GCCGAGTTTTTGGCTAAAATGAGTCACGAACTGCGCACGCCGCTCAATGGTGTGCTCGGTGTTTCCCAACTGCTAAAACG
GACCCCACTCAATGATGAACAGCGCGAACACGTGGCTGTGTTATGCAGCAGTGGTGAACATTTGCTCGCGGTGCTGAATG
ACATCTTGGATTTCTCACGCTTAGAGCAGGGCAAATTCCGTATTCAAAAGAATGAGTTTCGCCTTAAAGAGTTGGTGTGC
GCGATTGACCGCATTTATCGACCTTTATGTAATGAAAAAGGCTTGGAACTGATGGTGAATTCCAATATCACCACCGCAGC
GATTGTGCGCAGCGATCAGATCCGGATTAACCAAATCTTGTTCAATTTGCTCAATAACGCGATCAAGTTTACTCACCAAG
GTTCGATACGTGTCGAATTGCAATTAATTGAAGGCGATCCGTTAGCTCAACTGGTGATTCAAGTCGTCGATACGGGGATT
GGTATCCGCGAGCAAGATTTAACGGTGATTTTTGAACCCTTCATGCAAGCTGAATCGACCACCACTCGAGAGTACGGCGG
AAGTGGTTTGGGCTTAACGATTGTGCACAGCTTAGTCGAAATGCTCAGTGGCCAACTGCACGTCAGCTCCGAGTATGGCA
TTGGTACACGTTTTGAAATTCAGTTACCGATTGAGCTGGTAGAAAGACCGGATGCGCCGCAGCAGTTGTTACCGGCTCCT
GATCCTCAACCGTTATTTGATAAAACTCTGCGTGTACTGTTGGTGGAGGATAACCACACCAATGCCTTTATTGCTCAAGC
ATTCTGTCGTAAGTATGGCTTAGATGTGAGCTGGGTAACCGATGGACTACAGGCGATTGAAGAGCTCAAAATACATGACT
ACGACTTAGTGCTGATGGATAACCAGTTACCCTATCTGGATGGCGTTGAGACCACGCGCACCATCAAAAAAGTACTGCAC
CTTCCGGTGGTGGTGTATGCCTGCACTGCGGATGGCTTAGAAGAAACACGGCAAGCATTTTTCCATGCGGGCGCGGAATA
TGTGTTAGTGAAGCCACTGAAAGAGCAGACTTTGCATAAAGCGCTGGAGCATTTCAAACATCATCATGGCCAAAAAAACG
CTGGCTTAAATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(480-544)

LuxQ, periplasmic (LuxQ-periplasm)

(41-277)

Response regulator receiver domain (Response_reg)

(732-842)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(592-705)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxQ Vibrio cholerae strain A1552

99.767

100

0.998

Multiple sequence alignment