Detailed information NTG0158968

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A9P85_RS06460
• Genome accession: NZ_CP016029
• Coordinates: 1444305..1445330 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain Pontiac
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1439305..1450330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9P85_RS06430 (A9P85_06430)	-	1439736..1440053 (+)	318	WP_011215326.1	DUF2845 domain-containing protein	-
A9P85_RS06435 (A9P85_06435)	-	1440090..1440461 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
A9P85_RS06440 (A9P85_06440)	-	1440518..1442233 (-)	1716	WP_027220722.1	NAD-dependent malic enzyme	-
A9P85_RS06445 (A9P85_06445)	-	1442313..1442696 (+)	384	WP_027220721.1	hypothetical protein	-
A9P85_RS06450 (A9P85_06450)	surE	1442699..1443457 (+)	759	WP_011215330.1	5'/3'-nucleotidase SurE	-
A9P85_RS06455 (A9P85_06455)	-	1443476..1444219 (+)	744	WP_027220720.1	peptidoglycan DD-metalloendopeptidase family protein	-
A9P85_RS06460 (A9P85_06460)	rpoS	1444305..1445330 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
A9P85_RS06465 (A9P85_06465)	hmgA	1445433..1446683 (-)	1251	WP_027220719.1	homogentisate 1,2-dioxygenase	-
A9P85_RS06470 (A9P85_06470)	-	1446830..1447573 (+)	744	WP_011213598.1	YebC/PmpR family DNA-binding transcriptional regulator	-
A9P85_RS06475 (A9P85_06475)	ruvC	1447573..1448097 (+)	525	WP_027220718.1	crossover junction endodeoxyribonuclease RuvC	-
A9P85_RS06480 (A9P85_06480)	ruvA	1448094..1448693 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
A9P85_RS06485 (A9P85_06485)	-	1448743..1449063 (+)	321	WP_027220717.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=158968 A9P85_RS06460 WP_011213596.1 1444305..1445330(+) (rpoS) [Legionella pneumophila strain Pontiac]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=158968 A9P85_RS06460 WP_011213596.1 1444305..1445330(+) (rpoS) [Legionella pneumophila strain Pontiac]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCTTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAATCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCCTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCGGAAGAAATAGCAGAAA
TGGTGGATAAACCTTTGGAGGATGTCCAAAAATTATTGGGTTTGAATGATAAAGTCGCTTCGGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAACGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548