Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   SAST38_RS07705 Genome accession   NZ_CP012972
Coordinates   1575145..1575642 (-) Length   165 a.a.
NCBI ID   WP_029642894.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST20130938     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570145..1580642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAST38_RS07680 (SAST38_01616) gcvPB 1570307..1571779 (-) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  SAST38_RS07685 (SAST38_01617) gcvPA 1571772..1573118 (-) 1347 WP_000019689.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAST38_RS07690 (SAST38_01618) gcvT 1573138..1574229 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  SAST38_RS07695 (SAST38_03818) - 1574388..1574912 (-) 525 WP_001015123.1 shikimate kinase -
  SAST38_RS07700 - 1574902..1575048 (-) 147 WP_001789879.1 hypothetical protein -
  SAST38_RS07705 comGF 1575145..1575642 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAST38_RS07710 (SAST38_03313) comGE 1575560..1575859 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SAST38_RS07715 (SAST38_03314) comGD 1575846..1576292 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAST38_RS07720 (SAST38_03315) comGC 1576270..1576581 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAST38_RS07725 (SAST38_01624) comGB 1576595..1577665 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAST38_RS07730 (SAST38_01625) comGA 1577637..1578611 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  SAST38_RS07735 (SAST38_04359) - 1578636..1580282 (-) 1647 WP_000277718.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19196.92 Da        Isoelectric Point: 10.2192

>NTDB_id=158736 SAST38_RS07705 WP_029642894.1 1575145..1575642(-) (comGF) [Staphylococcus aureus strain ST20130938]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTNVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=158736 SAST38_RS07705 WP_029642894.1 1575145..1575642(-) (comGF) [Staphylococcus aureus strain ST20130938]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAAATGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(70-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

97.576

100

0.976

Multiple sequence alignment