Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AOB58_RS00465 Genome accession   NZ_CP012968
Coordinates   94717..95346 (+) Length   209 a.a.
NCBI ID   WP_002507206.1    Uniprot ID   -
Organism   Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 89717..100346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOB58_RS00435 (AOB58_87) - 89741..90460 (+) 720 WP_002507200.1 glutamine amidotransferase -
  AOB58_RS00440 (AOB58_88) - 90559..91545 (-) 987 WP_021339816.1 aromatic acid exporter family protein -
  AOB58_RS00445 (AOB58_89) map 91726..92478 (+) 753 WP_002507202.1 type I methionyl aminopeptidase -
  AOB58_RS00450 (AOB58_90) - 92583..92969 (+) 387 WP_002507203.1 hypothetical protein -
  AOB58_RS00455 (AOB58_91) liaF 92986..93687 (+) 702 WP_064782813.1 cell wall-active antibiotics response protein LiaF -
  AOB58_RS00460 (AOB58_92) vraS 93684..94727 (+) 1044 WP_002511392.1 sensor histidine kinase Regulator
  AOB58_RS00465 (AOB58_93) vraR 94717..95346 (+) 630 WP_002507206.1 response regulator transcription factor Regulator
  AOB58_RS00470 (AOB58_94) - 95542..96708 (-) 1167 WP_002511391.1 YihY/virulence factor BrkB family protein -
  AOB58_RS00475 (AOB58_95) - 96939..97223 (-) 285 WP_002507208.1 hypothetical protein -
  AOB58_RS00480 (AOB58_96) - 97230..97694 (-) 465 WP_002507209.1 low molecular weight protein-tyrosine-phosphatase -
  AOB58_RS00485 (AOB58_97) - 97829..98032 (+) 204 WP_002507210.1 DUF1128 family protein -
  AOB58_RS00490 (AOB58_98) - 98048..99286 (+) 1239 WP_064782814.1 aminopeptidase -
  AOB58_RS00495 (AOB58_99) - 99381..99902 (+) 522 WP_002511389.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23734.25 Da        Isoelectric Point: 4.7666

>NTDB_id=158628 AOB58_RS00465 WP_002507206.1 94717..95346(+) (vraR) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
MTIKVLFVDDHEMVRIGISSYLSTQPDIDIVGEGQSGKDAIEKAHQLNPDLILMDLLMDDMDGVDATEQIKKDLPHIKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYKNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=158628 AOB58_RS00465 WP_002507206.1 94717..95346(+) (vraR) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
ATGACGATTAAAGTTTTGTTTGTTGATGATCATGAAATGGTTCGAATTGGAATTTCTAGTTACTTATCTACACAGCCAGA
TATTGATATTGTAGGGGAAGGTCAGTCAGGAAAAGATGCGATTGAAAAGGCTCATCAACTAAATCCAGATTTAATCTTAA
TGGACTTGCTTATGGACGATATGGATGGTGTCGATGCTACCGAGCAAATTAAAAAAGACTTACCCCATATTAAAGTTGTA
ATGTTAACAAGTTACATTGAAGATAATGAAGTATATCGTGCTTTAGATTCTGGCGTAGACAGCTATATTTTGAAAACGAC
TAGTGCTAGTGATATAGCCGAGGCTATTCGTAAAACGTATAAAAATGAGTCTGTATTTGAAGCTGAAGTGCTTGTGAAGA
TGAGAAATAGAATGAAACAACGTGCCGAATTATATGAAATGTTAACGGAACGAGAAATGGAAATTCTATTACTTATCGCA
AAAGGTTACTCAAACCAAGAAATTGCGAGTGCATCACACATAACGATTAAAACAGTAAAAACACATGTAAGTAATATATT
AAGTAAATTAGAAGTACAAGATAGAACACAAGCAGTTATTTATGCATTCCAGCATAATTTAATACAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885

Multiple sequence alignment