Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   AOB58_RS00155 Genome accession   NZ_CP012968
Coordinates   32453..33169 (-) Length   238 a.a.
NCBI ID   WP_002507139.1    Uniprot ID   -
Organism   Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 27453..38169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOB58_RS00135 (AOB58_26) - 28540..28767 (+) 228 WP_002507135.1 sulfurtransferase TusA family protein -
  AOB58_RS00140 (AOB58_27) - 28911..29873 (+) 963 WP_021339966.1 LacI family DNA-binding transcriptional regulator -
  AOB58_RS00145 (AOB58_28) - 29966..31450 (+) 1485 WP_021339967.1 sucrose-6-phosphate hydrolase -
  AOB58_RS00150 (AOB58_29) - 31447..32415 (+) 969 WP_021339968.1 carbohydrate kinase -
  AOB58_RS00155 (AOB58_30) agrA 32453..33169 (-) 717 WP_002507139.1 LytTR family DNA-binding domain-containing protein Regulator
  AOB58_RS00160 - 33182..34477 (-) 1296 WP_021339969.1 GHKL domain-containing protein -
  AOB58_RS00165 (AOB58_32) - 34501..34638 (-) 138 WP_021339970.1 cyclic lactone autoinducer peptide -
  AOB58_RS00170 (AOB58_33) - 34641..35210 (-) 570 WP_021339971.1 accessory gene regulator AgrB -
  AOB58_RS00175 (AOB58_34) - 35969..36754 (-) 786 WP_021339973.1 carbon-nitrogen family hydrolase -
  AOB58_RS00180 (AOB58_35) - 36987..37616 (-) 630 WP_064782801.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27930.75 Da        Isoelectric Point: 4.9764

>NTDB_id=158626 AOB58_RS00155 WP_002507139.1 32453..33169(-) (agrA) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
MKIFICEDDERQRENMISIINNYIMIEEKPMEIEVATADPYEVLERSKDLSDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESTVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELNQLDDRFFRCHNSFVVNRHNIESIDSKSRIVYFKNQEHCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=158626 AOB58_RS00155 WP_002507139.1 32453..33169(-) (agrA) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
ATGAAGATATTCATATGTGAAGATGATGAAAGACAACGTGAGAATATGATTTCGATTATCAACAACTACATCATGATTGA
AGAGAAACCGATGGAAATTGAAGTTGCAACTGCCGATCCTTATGAAGTTTTAGAACGTTCTAAAGATTTAAGTGATATAG
GGTGTTACTTTTTAGATATACAATTGGAAGCCGACATTAACGGTATCAAGCTTGCTAGTGAAATTCGCAAGCACGATCCT
GTAGGTAATATCATTTTTGTTACAAGTCATAGCGAGCTTACATATCTTACTTTTGTTTATAAAGTAGCAGCGATGGACTT
TATTTTTAAAGATGATCCAGATGAATTAAAATCTAGAATCATTGATTGTTTAGAAACTTCAGAATCTAGGTTAAAATTAC
TTTCTAAAGAAAGCACTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCAGTATATGTTCAATATGATGATGTTATG
TTTTTTGAGTCCTCTACTAAATCTCATCGATTGATTGCGCACTTAGACAATAGACAAATTGAATTCTATGGTAACCTTAA
AGAACTTAACCAACTTGATGATAGATTCTTTAGATGTCATAACAGTTTCGTTGTTAACAGACATAATATTGAATCTATTG
ATTCAAAATCTCGCATTGTTTATTTCAAAAACCAAGAACATTGCTTTGCTTCAGTAAGAAATGTAAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.555

100

0.866

Multiple sequence alignment