Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACT75_RS09565 Genome accession   NZ_CP012959
Coordinates   1944909..1945211 (+) Length   100 a.a.
NCBI ID   WP_005554585.1    Uniprot ID   A0A142G259
Organism   Aggregatibacter actinomycetemcomitans strain 624     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1939909..1950211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT75_RS09525 (ACT75_09515) tolB 1940524..1941804 (+) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  ACT75_RS09530 (ACT75_09520) pal 1941819..1942286 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  ACT75_RS09550 (ACT75_09540) comN 1942991..1943512 (+) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACT75_RS09555 (ACT75_09545) - 1943499..1944242 (+) 744 WP_005549806.1 PulJ/GspJ family protein -
  ACT75_RS09560 (ACT75_09550) - 1944239..1944934 (+) 696 WP_005537951.1 DUF2572 family protein -
  ACT75_RS09565 (ACT75_09555) comQ 1944909..1945211 (+) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  ACT75_RS09570 (ACT75_09560) recC 1945257..1948646 (+) 3390 WP_005537947.1 exodeoxyribonuclease V subunit gamma -
  ACT75_RS09575 (ACT75_09565) rimI 1948648..1949091 (-) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  ACT75_RS09580 (ACT75_09570) - 1949101..1949538 (-) 438 WP_005549811.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11675.61 Da        Isoelectric Point: 10.6243

>NTDB_id=158619 ACT75_RS09565 WP_005554585.1 1944909..1945211(+) (comQ) [Aggregatibacter actinomycetemcomitans strain 624]
MILRLRKIDYKGMSLLSLLVTLSLFSGLFLTFNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRF
QVVCSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=158619 ACT75_RS09565 WP_005554585.1 1944909..1945211(+) (comQ) [Aggregatibacter actinomycetemcomitans strain 624]
ATGATTTTGCGGTTACGGAAAATTGATTACAAAGGCATGAGCCTATTGTCTTTGTTGGTTACGTTGAGCTTATTCAGCGG
GCTTTTTCTCACCTTCAATCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCAGCGTTTTCAAGCCATCC
AAATTGCCGAAAATCAGCATCAACGCCGTTTCCTTGGATTGCCTTGTGAATCGCAGGTGCAGCAAAATCAAATTCGTTTT
CAGGTGGTTTGTTCGCAAAATCAGGTGTCGGTGAAATATCCTCGTGGTGAAATTAGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.122

98

0.55

Multiple sequence alignment