Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ACT75_RS09550 Genome accession   NZ_CP012959
Coordinates   1942991..1943512 (+) Length   173 a.a.
NCBI ID   WP_005562086.1    Uniprot ID   A0AAC8Y0V5
Organism   Aggregatibacter actinomycetemcomitans strain 624     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1937991..1948512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT75_RS09510 (ACT75_09500) tolQ 1938127..1938816 (+) 690 WP_005545584.1 protein TolQ -
  ACT75_RS09515 (ACT75_09505) tolR 1938902..1939324 (+) 423 WP_005542289.1 colicin uptake protein TolR -
  ACT75_RS09520 (ACT75_09510) tolA 1939341..1940489 (+) 1149 WP_005549166.1 cell envelope integrity protein TolA -
  ACT75_RS09525 (ACT75_09515) tolB 1940524..1941804 (+) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  ACT75_RS09530 (ACT75_09520) pal 1941819..1942286 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  ACT75_RS09550 (ACT75_09540) comN 1942991..1943512 (+) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACT75_RS09555 (ACT75_09545) - 1943499..1944242 (+) 744 WP_005549806.1 PulJ/GspJ family protein -
  ACT75_RS09560 (ACT75_09550) - 1944239..1944934 (+) 696 WP_005537951.1 DUF2572 family protein -
  ACT75_RS09565 (ACT75_09555) comQ 1944909..1945211 (+) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19865.08 Da        Isoelectric Point: 8.7359

>NTDB_id=158618 ACT75_RS09550 WP_005562086.1 1942991..1943512(+) (comN) [Aggregatibacter actinomycetemcomitans strain 624]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGKRWCLTAQ
IKNSHLCDCLNPVACPQNVFAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTTSTTCFVLQANQQRTLFSFFNVGSLKLK
GNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=158618 ACT75_RS09550 WP_005562086.1 1942991..1943512(+) (comN) [Aggregatibacter actinomycetemcomitans strain 624]
ATGCAAAAAGGATTCACTTTGCTGGAAATGTTAATTGCATTATTTATTATCAGCCTGTTGCTGACGCTTGCTTTACCGGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAAGCGCTGGTGTTTGACGGCGCAA
ATTAAAAATAGCCATTTGTGTGACTGTTTAAATCCTGTTGCTTGCCCGCAAAATGTTTTCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACCGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGACTT
CTACCACTTGTTTTGTGCTACAAGCCAATCAGCAGCGTACTTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAA
GGTAATCAATCTTTGAGTGCTTGCGTCAATGATGAAGAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578

Multiple sequence alignment