Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ASO12_RS07815 Genome accession   NZ_CP016015
Coordinates   1448941..1451130 (-) Length   729 a.a.
NCBI ID   WP_047917979.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 32867     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443941..1456130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASO12_RS14205 - 1444993..1445130 (+) 138 WP_153707873.1 hypothetical protein -
  ASO12_RS07795 (ASO12_07795) - 1445209..1446005 (+) 797 Protein_1466 ABC transporter permease -
  ASO12_RS07800 (ASO12_07800) - 1446005..1446697 (+) 693 WP_003689290.1 ATP-binding cassette domain-containing protein -
  ASO12_RS07805 (ASO12_07805) - 1446889..1447503 (+) 615 WP_003703682.1 CadD family cadmium resistance transporter -
  ASO12_RS07810 (ASO12_07810) - 1447799..1448894 (+) 1096 Protein_1469 NnrS family protein -
  ASO12_RS07815 (ASO12_07815) priA 1448941..1451130 (-) 2190 WP_047917979.1 primosomal protein N' Machinery gene
  ASO12_RS07820 (ASO12_07820) - 1451270..1452070 (+) 801 WP_047919267.1 DsbC family protein -
  ASO12_RS07825 (ASO12_07825) - 1452172..1454106 (-) 1935 WP_003695602.1 MacB family efflux pump subunit -
  ASO12_RS07830 (ASO12_07830) - 1454172..1455350 (-) 1179 WP_047917536.1 MacA family efflux pump subunit -
  ASO12_RS07835 (ASO12_07835) - 1455576..1455965 (+) 390 WP_003689308.1 type IV pilin protein -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 81146.00 Da        Isoelectric Point: 8.0826

>NTDB_id=158596 ASO12_RS07815 WP_047917979.1 1448941..1451130(-) (priA) [Neisseria gonorrhoeae strain 32867]
MIYHRIAVNVPLSDGLLTYSHSEPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDAARILSVQTVFVEEKPLSQSWRDLLA
FTSRYYHYPIGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQANAQA
AKLIEDWAEQGWIETTEAAKPVLRPYRGQASHSEFVLNTDQQKASDEIQTALGRFRSFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVENRFADVPTAVLHSRMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPLPDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPVVLGSATPSLESWHKAQSGAYRLLQLTERAHASAQLPQVDILNIGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPFKCPDCG
NQDLTAVGHGTQRVEESLRALLPKAAVVRVDRDSTAHKNDWADLYRRIANDEIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSRFGAAPMLMVRLAERERAQVFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=158596 ASO12_RS07815 WP_047917979.1 1448941..1451130(-) (priA) [Neisseria gonorrhoeae strain 32867]
ATGATCTACCATCGCATCGCTGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCGCATTCCGAGCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTTCGCAATAAAACTGTTGTCGGGATGGTGTGGGAAACGGATATTGCGCCCGATATGG
ATGCGGCGCGGATTTTGAGCGTTCAGACGGTCTTTGTGGAAGAAAAGCCGCTGTCTCAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGATTGGGCAGGCTGTATTTGCCGCATTGCCGCAGGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCGTTGTTTTATGCTTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCTCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCGGCGTTGAAACAGGCAAACGCGCAGGCG
GCGAAATTGATTGAGGATTGGGCGGAGCAGGGCTGGATTGAAACGACGGAAGCGGCGAAACCTGTTTTAAGGCCGTACCG
CGGGCAGGCTTCGCACTCTGAATTTGTATTAAATACCGACCAGCAGAAGGCTTCCGATGAAATTCAGACGGCATTGGGAC
GCTTCCGGTCGTTTCTGCTGTACGGCATTACCGGCAGCGGCAAGACCGAGGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCGCAGGGGCGACAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTAAAGCGGGTGGAAAACCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGCCGGATGGCGGCAGGCAGGCGCACGCAGGATTATCTGCGCGCGATGTTGG
GGCAGGCGAAGCTGGTGATCGGCACGCGGCTGGCGGTGTTTACGCCTTTGCCTGATGTCGGGCTGATTGTGGTCGATGAG
GAACACGACGGCTCGTTCAAACAAGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGTCCCGTCGTGTTGGGCAGTGCCACGCCCAGCTTGGAGAGTTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATGCTTCCGCGCAACTGCCACAAGTGGACATCCTCAACATAGGTCGTCTGAAACTCGAT
AACGGCTTCTCACCGCAAGCCTTGCAGCTTTTGAAACAGAACTTTGAAGCGGGCGGTATGTCGCTGGTGTACCTTAACCG
GCGCGGCTTCGCGCCTGCGCTGTTTTGCGGCGACTGCGGCCATACCTTCGGCTGCCCGAACTGCTCCGCCAAAATGGTGC
TGCACCAACGCGCCCGCCAACTGCGCTGCCACCACTGCGACCACCGCGAACCCATCCCGTTCAAATGTCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGACACGGTACGCAGCGCGTCGAAGAAAGCCTGCGCGCCTTGCTGCCCAAGGCAGCCGT
CGTCCGCGTCGATAGGGACAGTACGGCGCACAAAAACGACTGGGCAGATTTGTACCGCCGCATCGCCAACGACGAAATCG
ACATTCTGGTCGGCACGCAGATGCTTGCCAAAGGCCATGATTTCGCGCGGCTCAACCTCGTTATCGTGTTGAACGCCGAC
GGCAGCCTGTACAGCGCGGATTTCCGTGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAAGTGTCCGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGCTGATACAGACCCAACTGCCCGAACACCCTGTCTTCGCCGCCGTCAAAGCGCAGGACT
ACGCCGTGTTTGCCGAAAACGAATTGAACGAACGGCAAATGTTCGCCATGCCGCCTTTCGGTTTTCAGACGGCCGTCCGT
GCCGATGCGCCGCGTGTTGCCGATGCGATGGAATTTCTCAACGCCGCCAAAGAAACCCTCGCCCCGCTCTTGCCCGAAAG
CGTCTCCCGGTTCGGTGCCGCCCCGATGCTGATGGTGCGCCTTGCCGAACGCGAACGTGCGCAAGTTTTCCTCGAATCAA
CATCCCGACAAGATTTGCACCGCGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAGAACCGCGACGGCAAAATCCGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(516-588)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

DEAD/DEAH box helicase (DEAD)

(208-361)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.806

100

0.373

Multiple sequence alignment