Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | AEI16_RS05705 | Genome accession | NZ_CP012957 |
| Coordinates | 1075845..1076795 (+) | Length | 316 a.a. |
| NCBI ID | WP_002867402.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain CJ001CC354 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1055772..1086901 | 1075845..1076795 | within | 0 |
Gene organization within MGE regions
Location: 1055772..1086901
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AEI16_RS05610 (AEI16_05570) | pglI | 1055772..1056701 (-) | 930 | WP_002867212.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| AEI16_RS05615 (AEI16_05575) | pglH | 1056694..1057773 (-) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| AEI16_RS05620 (AEI16_05580) | pglK | 1057770..1059464 (-) | 1695 | WP_002867213.1 | ABC-type lipopolysaccharide transporter PglK | - |
| AEI16_RS05625 (AEI16_05585) | galE | 1059458..1060444 (-) | 987 | WP_002867214.1 | UDP-glucose 4-epimerase GalE | - |
| AEI16_RS05630 (AEI16_05590) | - | 1060503..1061297 (-) | 795 | WP_002860221.1 | 3'-5' exonuclease | - |
| AEI16_RS05635 (AEI16_05595) | waaC | 1061364..1062392 (+) | 1029 | WP_002859241.1 | lipopolysaccharide heptosyltransferase I | - |
| AEI16_RS05640 (AEI16_05600) | htrB | 1062382..1063269 (+) | 888 | WP_260627594.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| AEI16_RS05645 (AEI16_05605) | - | 1063266..1064033 (+) | 768 | Protein_1094 | glycosyltransferase family 2 protein | - |
| AEI16_RS05650 (AEI16_05610) | - | 1064026..1065087 (+) | 1062 | WP_220575214.1 | glycosyltransferase family 4 protein | - |
| AEI16_RS05655 (AEI16_05615) | - | 1065084..1065947 (-) | 864 | WP_260627595.1 | glycosyltransferase family 2 protein | - |
| AEI16_RS05660 (AEI16_05620) | - | 1065940..1067148 (-) | 1209 | WP_002867942.1 | glycosyltransferase family 2 protein | - |
| AEI16_RS05665 (AEI16_05625) | - | 1067296..1068183 (-) | 888 | Protein_1098 | glycosyltransferase family A protein | - |
| AEI16_RS05670 (AEI16_05630) | - | 1068368..1069420 (-) | 1053 | WP_079460573.1 | glycosyltransferase family 2 protein | - |
| AEI16_RS05675 (AEI16_05635) | - | 1069417..1070466 (-) | 1050 | WP_002867408.1 | glycosyltransferase | - |
| AEI16_RS05680 (AEI16_05640) | glf | 1070549..1071661 (-) | 1113 | WP_260627596.1 | UDP-galactopyranose mutase | - |
| AEI16_RS05685 (AEI16_05645) | galE | 1071663..1072637 (-) | 975 | WP_260627597.1 | UDP-glucose 4-epimerase GalE | - |
| AEI16_RS05690 (AEI16_05650) | - | 1072634..1073932 (-) | 1299 | WP_260627598.1 | UDP-glucose dehydrogenase family protein | - |
| AEI16_RS05695 (AEI16_05655) | - | 1073938..1074894 (-) | 957 | WP_002867404.1 | UDP-glucuronic acid decarboxylase family protein | - |
| AEI16_RS05700 (AEI16_05660) | - | 1074965..1075786 (-) | 822 | WP_002867403.1 | glycosyltransferase family 2 protein | - |
| AEI16_RS05705 (AEI16_05665) | waaF | 1075845..1076795 (+) | 951 | WP_002867402.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| AEI16_RS05710 (AEI16_05670) | - | 1076781..1077545 (-) | 765 | WP_002867401.1 | glycosyltransferase family 25 protein | - |
| AEI16_RS05715 (AEI16_05675) | gmhA | 1077545..1078105 (-) | 561 | WP_002867400.1 | D-sedoheptulose 7-phosphate isomerase | - |
| AEI16_RS05720 (AEI16_05680) | rfaE1 | 1078102..1079487 (-) | 1386 | WP_002867399.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| AEI16_RS05725 (AEI16_05685) | rfaD | 1079480..1080433 (-) | 954 | WP_002867398.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| AEI16_RS05730 (AEI16_05690) | gmhB | 1080434..1080995 (-) | 562 | Protein_1111 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| AEI16_RS05735 (AEI16_05695) | - | 1081076..1081378 (+) | 303 | WP_002852762.1 | c-type cytochrome | - |
| AEI16_RS05740 (AEI16_05700) | ccoS | 1081401..1081607 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| AEI16_RS05745 (AEI16_05705) | - | 1081604..1083961 (-) | 2358 | WP_074482782.1 | heavy metal translocating P-type ATPase | - |
| AEI16_RS05750 (AEI16_05710) | rho | 1084070..1085368 (+) | 1299 | WP_002852852.1 | transcription termination factor Rho | - |
| AEI16_RS05755 (AEI16_05715) | dnaX | 1085372..1086901 (+) | 1530 | WP_002867395.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36324.91 Da Isoelectric Point: 10.3207
>NTDB_id=158556 AEI16_RS05705 WP_002867402.1 1075845..1076795(+) (waaF) [Campylobacter jejuni strain CJ001CC354]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI
Nucleotide
Download Length: 951 bp
>NTDB_id=158556 AEI16_RS05705 WP_002867402.1 1075845..1076795(+) (waaF) [Campylobacter jejuni strain CJ001CC354]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
92.652 |
99.051 |
0.918 |