Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9Z04_RS21920 Genome accession   NZ_CP016007
Coordinates   4550352..4550828 (+) Length   158 a.a.
NCBI ID   WP_001313574.1    Uniprot ID   -
Organism   Escherichia coli strain NGF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4545352..4555828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Z04_RS21900 (A9Z04_21900) - 4545528..4548374 (+) 2847 WP_000820442.1 Ag43/Cah family autotransporter adhesin -
  A9Z04_RS21905 (A9Z04_21905) - 4548705..4549526 (+) 822 WP_001234582.1 DUF932 domain-containing protein -
  A9Z04_RS21915 (A9Z04_21915) - 4549863..4550336 (+) 474 WP_001313575.1 antirestriction protein -
  A9Z04_RS21920 (A9Z04_21920) radC 4550352..4550828 (+) 477 WP_001313574.1 RadC family protein Machinery gene
  A9Z04_RS21925 (A9Z04_21925) - 4550891..4551112 (+) 222 WP_000692315.1 DUF987 domain-containing protein -
  A9Z04_RS21930 (A9Z04_21930) - 4551131..4551775 (+) 645 WP_064640963.1 hypothetical protein -
  A9Z04_RS21935 (A9Z04_21935) - 4551825..4552199 (+) 375 WP_001285482.1 type IV toxin-antitoxin system YeeU family antitoxin -
  A9Z04_RS21940 (A9Z04_21940) - 4552246..4552620 (+) 375 WP_001094434.1 TA system toxin CbtA family protein -
  A9Z04_RS21945 (A9Z04_21945) - 4552617..4553108 (+) 492 WP_000976859.1 DUF5983 family protein -
  A9Z04_RS21950 (A9Z04_21950) - 4553120..4553317 (+) 198 WP_000839257.1 DUF957 domain-containing protein -
  A9Z04_RS21955 (A9Z04_21955) - 4553410..4554252 (+) 843 WP_001280460.1 DUF4942 domain-containing protein -
  A9Z04_RS21965 (A9Z04_21965) ghrA 4554723..4555661 (+) 939 WP_000351277.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17749.42 Da        Isoelectric Point: 7.6152

>NTDB_id=158546 A9Z04_RS21920 WP_001313574.1 4550352..4550828(+) (radC) [Escherichia coli strain NGF1]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=158546 A9Z04_RS21920 WP_001313574.1 4550352..4550828(+) (radC) [Escherichia coli strain NGF1]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
TAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGGCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399