Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AN415_RS01940 Genome accession   NZ_CP012952
Coordinates   421493..422311 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain D36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416493..427311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN415_RS20455 - 417075..417205 (-) 131 Protein_368 hypothetical protein -
  AN415_RS01910 (AN415_00390) rpoZ 417244..417522 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AN415_RS01915 (AN415_00391) gmk 417595..418224 (-) 630 WP_000015937.1 guanylate kinase -
  AN415_RS01920 (AN415_00392) ispH 418347..419297 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AN415_RS01925 (AN415_00393) fimU 419467..419940 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AN415_RS01930 (AN415_00394) pilV 419934..420494 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AN415_RS01935 (AN415_00395) pilW 420495..421496 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  AN415_RS01940 (AN415_00396) pilX 421493..422311 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AN415_RS01945 (AN415_00397) pilY1 422323..426177 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  AN415_RS01950 (AN415_00398) pilY2 426188..426670 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  AN415_RS01955 (AN415_00399) pilE 426667..427092 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=158508 AN415_RS01940 WP_000149374.1 421493..422311(+) (pilX) [Acinetobacter baumannii strain D36]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=158508 AN415_RS01940 WP_000149374.1 421493..422311(+) (pilX) [Acinetobacter baumannii strain D36]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment