Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9Z04_RS11620 Genome accession   NZ_CP016007
Coordinates   2410326..2410994 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain NGF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2405326..2415994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Z04_RS11590 (A9Z04_11590) rfaQ 2405504..2406562 (-) 1059 WP_000360397.1 lipopolysaccharide core heptosyltransferase RfaQ -
  A9Z04_RS11595 (A9Z04_11595) waaA 2406975..2408252 (+) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  A9Z04_RS11600 (A9Z04_11600) coaD 2408260..2408739 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  A9Z04_RS11605 (A9Z04_11605) mutM 2408778..2409587 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  A9Z04_RS11610 (A9Z04_11610) rpmG 2409685..2409852 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  A9Z04_RS11615 (A9Z04_11615) rpmB 2409873..2410109 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  A9Z04_RS11620 (A9Z04_11620) radC 2410326..2410994 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  A9Z04_RS11625 (A9Z04_11625) coaBC 2411166..2412386 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A9Z04_RS11630 (A9Z04_11630) dut 2412364..2412822 (+) 459 WP_000976070.1 dUTP diphosphatase -
  A9Z04_RS11635 (A9Z04_11635) slmA 2412929..2413525 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  A9Z04_RS11640 (A9Z04_11640) pyrE 2413562..2414203 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  A9Z04_RS11645 (A9Z04_11645) rph 2414269..2414985 (-) 717 WP_001247094.1 ribonuclease PH -
  A9Z04_RS11650 (A9Z04_11650) yicC 2415112..2415975 (+) 864 WP_000621332.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=158504 A9Z04_RS11620 WP_001297375.1 2410326..2410994(-) (radC) [Escherichia coli strain NGF1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=158504 A9Z04_RS11620 WP_001297375.1 2410326..2410994(-) (radC) [Escherichia coli strain NGF1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGAG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment