Detailed information NTG0158491

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FORC23_RS13835
• Genome accession: NZ_CP012950
• Coordinates: 2987610..2988656 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_023 isolate 378
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2982610..2993656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC23_RS13815 (FORC23_2583)	rplC	2983183..2983812 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
FORC23_RS13820 (FORC23_2584)	rpsJ	2983827..2984138 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
FORC23_RS13825 (FORC23_2585)	rpmE	2984596..2984817 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
FORC23_RS13830 (FORC23_2586)	priA	2985112..2987316 (+)	2205	WP_070226003.1	primosomal protein N'	-
FORC23_RS13835 (FORC23_2587)	cytR	2987610..2988656 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
FORC23_RS13840 (FORC23_2588)	ftsN	2988833..2989378 (+)	546	WP_005481405.1	cell division protein FtsN	-
FORC23_RS13845 (FORC23_2589)	hslV	2989542..2990093 (+)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
FORC23_RS13850 (FORC23_2590)	hslU	2990117..2991448 (+)	1332	WP_021449544.1	HslU--HslV peptidase ATPase subunit	-
FORC23_RS13855 (FORC23_2591)	-	2991633..2992550 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
FORC23_RS13860 (FORC23_2592)	rraA	2992627..2993139 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
FORC23_RS13865 (FORC23_2593)	zapB	2993244..2993486 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=158491 FORC23_RS13835 WP_254894148.1 2987610..2988656(+) (cytR) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=158491 FORC23_RS13835 WP_254894148.1 2987610..2988656(+) (cytR) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCAATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCTCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCCGCTTTTGAAGCGGTCAATTACCTAACTCAGCT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTACTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGTGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871