Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9Z04_RS07945 Genome accession   NZ_CP016007
Coordinates   1669707..1670183 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain NGF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1664707..1675183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Z04_RS07920 (A9Z04_07920) - 1664913..1667390 (+) 2478 WP_001350100.1 hypothetical protein -
  A9Z04_RS07925 (A9Z04_07925) - 1667466..1667921 (+) 456 WP_000581504.1 IrmA family protein -
  A9Z04_RS07930 (A9Z04_07930) - 1668000..1668233 (+) 234 WP_001119729.1 DUF905 family protein -
  A9Z04_RS07935 (A9Z04_07935) - 1668333..1669151 (+) 819 WP_001520163.1 DUF932 domain-containing protein -
  A9Z04_RS07940 (A9Z04_07940) - 1669206..1669691 (+) 486 WP_001520165.1 antirestriction protein -
  A9Z04_RS07945 (A9Z04_07945) radC 1669707..1670183 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  A9Z04_RS07950 (A9Z04_07950) - 1670246..1670467 (+) 222 WP_000692316.1 DUF987 domain-containing protein -
  A9Z04_RS07960 (A9Z04_07960) cbeA 1670630..1670998 (+) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  A9Z04_RS07965 (A9Z04_07965) - 1671088..1671462 (+) 375 WP_000854753.1 TA system toxin CbtA family protein -
  A9Z04_RS07970 (A9Z04_07970) - 1671459..1671947 (+) 489 WP_000777541.1 DUF5983 family protein -
  A9Z04_RS07975 (A9Z04_07975) - 1671959..1672156 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  A9Z04_RS07980 (A9Z04_07980) - 1672253..1672822 (+) 570 WP_001290241.1 DUF4942 domain-containing protein -
  A9Z04_RS07985 (A9Z04_07985) - 1673164..1673334 (+) 171 Protein_1535 IS110 family transposase -
  A9Z04_RS07990 (A9Z04_07990) - 1674145..1675128 (+) 984 WP_001616958.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=158486 A9Z04_RS07945 WP_001186726.1 1669707..1670183(+) (radC) [Escherichia coli strain NGF1]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=158486 A9Z04_RS07945 WP_001186726.1 1669707..1670183(+) (radC) [Escherichia coli strain NGF1]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment