Detailed information NTG0158482

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A9Z04_RS06180
• Genome accession: NZ_CP016007
• Coordinates: 1290002..1290994 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NGF1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1285002..1295994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9Z04_RS06160 (A9Z04_06160)	ygbM	1285640..1286416 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
A9Z04_RS06165 (A9Z04_06165)	ygbN	1286505..1287869 (+)	1365	WP_000104433.1	GntP family transporter	-
A9Z04_RS06170 (A9Z04_06170)	-	1288012..1289055 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
A9Z04_RS06175 (A9Z04_06175)	-	1289280..1289831 (+)	552	WP_001179443.1	flavodoxin family protein	-
A9Z04_RS06180 (A9Z04_06180)	rpoS	1290002..1290994 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A9Z04_RS06185 (A9Z04_06185)	nlpD	1291057..1292151 (-)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
A9Z04_RS06190 (A9Z04_06190)	pcm	1292336..1292962 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A9Z04_RS06195 (A9Z04_06195)	surE	1292956..1293717 (-)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
A9Z04_RS06200 (A9Z04_06200)	truD	1293698..1294747 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
A9Z04_RS06205 (A9Z04_06205)	ispF	1294744..1295223 (-)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A9Z04_RS06210 (A9Z04_06210)	ispD	1295223..1295933 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=158482 A9Z04_RS06180 WP_000081550.1 1290002..1290994(-) (rpoS) [Escherichia coli strain NGF1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=158482 A9Z04_RS06180 WP_000081550.1 1290002..1290994(-) (rpoS) [Escherichia coli strain NGF1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715