Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC23_RS08835 Genome accession   NZ_CP012950
Coordinates   1886570..1887991 (+) Length   473 a.a.
NCBI ID   WP_005454911.1    Uniprot ID   A0A0L8TA80
Organism   Vibrio parahaemolyticus strain FORC_023 isolate 378     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1881570..1892991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC23_RS08815 (FORC23_1634) - 1881629..1882381 (-) 753 WP_031823629.1 adenosylcobinamide-GDP ribazoletransferase -
  FORC23_RS08820 (FORC23_1635) cobT 1882426..1883469 (-) 1044 WP_025508768.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC23_RS08825 (FORC23_1636) - 1884153..1884848 (+) 696 WP_017448627.1 NAD(P)H-binding protein -
  FORC23_RS08830 (FORC23_1637) - 1885041..1886414 (+) 1374 WP_005486634.1 L-cystine transporter -
  FORC23_RS08835 (FORC23_1638) sbcB 1886570..1887991 (+) 1422 WP_005454911.1 exodeoxyribonuclease I Machinery gene
  FORC23_RS08840 - 1888047..1888421 (+) 375 WP_070225819.1 CidA/LrgA family protein -
  FORC23_RS08845 (FORC23_1639) - 1888423..1889100 (+) 678 WP_005454891.1 LrgB family protein -
  FORC23_RS08850 (FORC23_1640) cdd 1889465..1890352 (+) 888 WP_020840481.1 cytidine deaminase -
  FORC23_RS08855 (FORC23_1641) purT 1890500..1891675 (+) 1176 WP_025546268.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FORC23_RS08860 (FORC23_1642) - 1891777..1892427 (-) 651 WP_005480776.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54615.95 Da        Isoelectric Point: 4.9813

>NTDB_id=158481 FORC23_RS08835 WP_005454911.1 1886570..1887991(+) (sbcB) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=158481 FORC23_RS08835 WP_005454911.1 1886570..1887991(+) (sbcB) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAGGGTCTATCCGAGCCT
GAGTTTATTGCTAAGATTCACGCCGAGTTATCGAAGCCAAAAACCACCAGCCTAGGCTATAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCCTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAATGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACAGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCTGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCTCTGCTATTCAGATACCGTGCTCGTAACTTCCCGGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L8TA80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment