Detailed information NTG0158469

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC23_RS03045
• Genome accession: NZ_CP012950
• Coordinates: 621910..622899 (+)
• Length: 329 a.a.
• NCBI ID: WP_025510234.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_023 isolate 378
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 616910..627899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC23_RS03010 (FORC23_0510)	ftsB	616918..617199 (+)	282	WP_005455577.1	cell division protein FtsB	-
FORC23_RS03015 (FORC23_0511)	ispD	617201..617905 (+)	705	WP_005487195.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC23_RS03020 (FORC23_0512)	ispF	617923..618399 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC23_RS03025 (FORC23_0513)	truD	618446..619489 (+)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
FORC23_RS03030 (FORC23_0514)	surE	619489..620265 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
FORC23_RS03035 (FORC23_0515)	-	620265..620891 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC23_RS03040 (FORC23_0516)	-	620906..621829 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC23_RS03045 (FORC23_0517)	rpoS	621910..622899 (+)	990	WP_025510234.1	RNA polymerase sigma factor RpoS	Regulator
FORC23_RS03050 (FORC23_0518)	mutS	622979..625540 (-)	2562	WP_025610927.1	DNA mismatch repair protein MutS	-
FORC23_RS03055 (FORC23_0519)	pncC	625625..626107 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
FORC23_RS03060 (FORC23_0520)	recA	626308..627351 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37590.41 Da
• Isoelectric Point: 4.6096

>NTDB_id=158469 FORC23_RS03045 WP_025510234.1 621910..622899(+) (rpoS) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MSISNTVSKVEEFEYDNTSETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=158469 FORC23_RS03045 WP_025510234.1 621910..622899(+) (rpoS) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATACGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTAGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851