Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A9K64_RS21315 Genome accession   NZ_CP015995
Coordinates   4228013..4228489 (-) Length   158 a.a.
NCBI ID   WP_064638539.1    Uniprot ID   -
Organism   Escherichia coli strain S51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4223013..4233489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9K64_RS21285 (A9K64_21285) - 4223214..4223855 (-) 642 WP_000439687.1 L-fuculose-phosphate aldolase -
  A9K64_RS21290 (A9K64_21290) mtnA 4223886..4225001 (-) 1116 WP_001022014.1 S-methyl-5-thioribose-1-phosphate isomerase -
  A9K64_RS21295 (A9K64_21295) mtnK 4225011..4226270 (-) 1260 WP_000132327.1 S-methyl-5-thioribose kinase -
  A9K64_RS27505 - 4227010..4227108 (-) 99 Protein_4085 TA system toxin CbtA family protein -
  A9K64_RS21300 (A9K64_21300) - 4227198..4227566 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  A9K64_RS21310 (A9K64_21310) - 4227729..4227950 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  A9K64_RS21315 (A9K64_21315) radC 4228013..4228489 (-) 477 WP_064638539.1 RadC family protein Machinery gene
  A9K64_RS27510 - 4228505..4228588 (-) 84 Protein_4089 antirestriction protein -
  A9K64_RS21320 (A9K64_21320) istA 4228782..4230323 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  A9K64_RS21325 (A9K64_21325) istB 4230338..4231084 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  A9K64_RS21330 (A9K64_21330) - 4231142..4231564 (-) 423 WP_064638588.1 antirestriction protein -
  A9K64_RS21340 (A9K64_21340) - 4231906..4232724 (-) 819 WP_001234656.1 DUF932 domain-containing protein -
  A9K64_RS21345 (A9K64_21345) - 4232842..4233037 (-) 196 Protein_4094 DUF905 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17677.26 Da        Isoelectric Point: 7.1437

>NTDB_id=158442 A9K64_RS21315 WP_064638539.1 4228013..4228489(-) (radC) [Escherichia coli strain S51]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVSDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=158442 A9K64_RS21315 WP_064638539.1 4228013..4228489(-) (radC) [Escherichia coli strain S51]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGTCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399