Detailed information NTG0158401

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A9K64_RS05205
• Genome accession: NZ_CP015995
• Coordinates: 1054589..1055581 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S51
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1049589..1060581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9K64_RS05175 (A9K64_05175)	ispD	1049650..1050360 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A9K64_RS05180 (A9K64_05180)	ispF	1050360..1050839 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A9K64_RS05185 (A9K64_05185)	truD	1050836..1051885 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
A9K64_RS05190 (A9K64_05190)	surE	1051866..1052627 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
A9K64_RS05195 (A9K64_05195)	pcm	1052621..1053247 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
A9K64_RS05200 (A9K64_05200)	nlpD	1053432..1054526 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
A9K64_RS05205 (A9K64_05205)	rpoS	1054589..1055581 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
A9K64_RS05210 (A9K64_05210)	-	1055702..1056109 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
A9K64_RS05215 (A9K64_05215)	-	1056256..1056849 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
A9K64_RS05220 (A9K64_05220)	-	1056849..1058276 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
A9K64_RS05225 (A9K64_05225)	-	1058287..1058523 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
A9K64_RS05230 (A9K64_05230)	ygbN	1058562..1059926 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=158401 A9K64_RS05205 WP_000081550.1 1054589..1055581(+) (rpoS) [Escherichia coli strain S51]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=158401 A9K64_RS05205 WP_000081550.1 1054589..1055581(+) (rpoS) [Escherichia coli strain S51]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715