Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   UW163_RS02410 Genome accession   NZ_CP012939
Coordinates   506481..507980 (+) Length   499 a.a.
NCBI ID   WP_014618027.1    Uniprot ID   F6G492
Organism   Ralstonia solanacearum strain UW163     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 501481..512980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UW163_RS02385 (UW163_02380) - 502672..503655 (+) 984 WP_014618022.1 KpsF/GutQ family sugar-phosphate isomerase -
  UW163_RS02390 (UW163_02385) - 503688..504275 (+) 588 WP_014618023.1 KdsC family phosphatase -
  UW163_RS02395 (UW163_02390) lptC 504277..504909 (+) 633 WP_014618024.1 LPS export ABC transporter periplasmic protein LptC -
  UW163_RS02400 (UW163_02395) lptA 504977..505573 (+) 597 WP_014618025.1 lipopolysaccharide transport periplasmic protein LptA -
  UW163_RS02405 (UW163_02400) lptB 505607..506383 (+) 777 WP_042567533.1 LPS export ABC transporter ATP-binding protein -
  UW163_RS02410 (UW163_02405) rpoN/rpoN1 506481..507980 (+) 1500 WP_014618027.1 RNA polymerase factor sigma-54 Machinery gene
  UW163_RS02415 (UW163_02410) hpf 508032..508385 (+) 354 WP_003262275.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  UW163_RS02420 (UW163_02415) ptsN 508750..509205 (+) 456 WP_003262274.1 PTS IIA-like nitrogen regulatory protein PtsN -
  UW163_RS02425 (UW163_02420) hprK 509276..510250 (+) 975 WP_003262273.1 HPr(Ser) kinase/phosphatase -
  UW163_RS02430 (UW163_02425) - 510441..510773 (+) 333 WP_039550978.1 PsiF family protein -
  UW163_RS02435 (UW163_02430) rapZ 510867..511757 (+) 891 WP_014618030.1 RNase adapter RapZ -
  UW163_RS02440 (UW163_02435) - 511835..512488 (+) 654 WP_014618031.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55158.56 Da        Isoelectric Point: 4.8522

>NTDB_id=158365 UW163_RS02410 WP_014618027.1 506481..507980(+) (rpoN/rpoN1) [Ralstonia solanacearum strain UW163]
MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARIGADGSVSALQSNSATPPPTE
SPPPAANGSDHADTAEASYENGSDFDSDYGSDRSDWSLDDFARKPQSDEDDRAPMQLREAEPTLREFLMEQLAPLKLSMR
DKGLVIFLIESLDDEGYLTGSLDEILADLPAELEVELDELQAALRMLQSFDPAGIGARSAAECLTLQLQRLESPAKPLAL
AIVNQHLELLAARDYTRLKKALSVDEGALKAAHELIRSLAPFPGHAFGRAEADFVVPDVVVRKTAAGWMAQLNPDVMPRL
RINDMYAQILRSSRGESGAANLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKSFFTHGEIAMRPLVLREIADTLGLH
ESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKNPLSDSRIAELLGEQGFVVARRT
VAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=158365 UW163_RS02410 WP_014618027.1 506481..507980(+) (rpoN/rpoN1) [Ralstonia solanacearum strain UW163]
ATGAAACAGTCGCTCCAGCTCCGTCTCTCTCAGCATCTGGCGCTCACGCCGCAACTGCAGCAGTCGATCCGGCTGCTGCA
GTTGTCGACCATCGAACTGCAACAGGAAGTCGAGCAGGCGCTGACCGAGAACCCGCTGCTGGAGCGCGAGAACGAGTGGC
TCGACACCTCCGCGCGCATCGGCGCCGATGGTTCGGTCAGCGCGCTGCAGAGCAACAGCGCCACCCCGCCGCCGACCGAA
TCGCCGCCGCCCGCCGCCAACGGCTCGGACCACGCCGACACAGCCGAAGCATCGTACGAAAACGGCAGCGACTTCGACAG
CGACTACGGCTCCGATCGCTCCGACTGGAGCCTCGACGACTTCGCACGCAAACCCCAGTCCGACGAAGACGACCGCGCCC
CGATGCAGCTGCGCGAGGCCGAGCCCACGCTGCGCGAATTCCTGATGGAACAGCTGGCGCCGCTCAAATTGTCCATGCGT
GACAAGGGCCTCGTCATCTTCCTGATCGAGTCGCTGGACGACGAAGGCTACCTGACCGGCTCGCTCGACGAGATCCTCGC
CGACCTGCCGGCCGAACTCGAGGTCGAACTCGACGAACTGCAAGCCGCGCTGCGCATGCTGCAGAGCTTCGACCCGGCCG
GCATCGGTGCACGCTCGGCTGCGGAATGCCTGACGCTGCAGTTGCAGCGCCTGGAGTCGCCAGCCAAGCCGCTCGCGCTG
GCCATCGTCAACCAGCATCTCGAGCTGCTCGCCGCGCGCGATTACACGCGCCTGAAGAAAGCGCTGTCCGTCGACGAAGG
CGCGCTGAAGGCCGCGCATGAACTGATCCGCTCGCTGGCGCCGTTCCCGGGCCACGCCTTCGGGCGCGCCGAGGCCGACT
TCGTCGTGCCCGATGTCGTGGTGCGTAAAACCGCCGCAGGCTGGATGGCGCAACTGAACCCCGACGTGATGCCGCGCCTG
CGCATCAACGACATGTACGCGCAGATCCTGCGCAGCAGCCGCGGCGAGTCGGGCGCCGCGAACCTGCAGCAAAAGCTGCA
GGAAGCGCGCTGGCTGATCAAAAACATCCAGCAGCGCTTCGACACCATCCTGCGTGTCTCGCAAGCGATTGTCGAACGTC
AAAAGAGCTTTTTCACGCACGGCGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCCGATACACTGGGTCTACAC
GAGTCCACGATCTCCCGTGTGACGACCAACAAGTACATGGCGACCCCCATGGGGACCTTCGAGCTGAAGTACTTCTTCGG
CAGCCATGTATCGACGGAAACCGGCGGGGCCGCGTCATCCACCGCGATACGCGCGCTCATCAAGCAACTTGTAGGAGCCG
AAGACCCGAAGAATCCTCTGTCCGATAGCAGAATTGCCGAGCTGTTAGGCGAACAAGGATTCGTGGTGGCCCGTCGGACG
GTGGCCAAGTACCGCGAAGCCCTCAAAATCCCAGCAGTGAATTTGCGCAAGTCTTTATAG

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(341-497)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

97.595

100

0.976

Multiple sequence alignment