Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   APQ97_RS09965 Genome accession   NZ_CP012911
Coordinates   1983460..1984173 (-) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain NSUI060     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1978141..2010694 1983460..1984173 within 0


Gene organization within MGE regions


Location: 1978141..2010694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS09930 (APQ97_09925) - 1978141..1978398 (-) 258 WP_002935939.1 hypothetical protein -
  APQ97_RS09935 (APQ97_09930) - 1978445..1978822 (-) 378 WP_002935940.1 DUF1310 family protein -
  APQ97_RS09940 (APQ97_09935) - 1978848..1979111 (-) 264 WP_022540536.1 hypothetical protein -
  APQ97_RS09945 (APQ97_09940) - 1979104..1979496 (-) 393 WP_014636774.1 DUF1310 family protein -
  APQ97_RS09950 (APQ97_09945) - 1979662..1981995 (-) 2334 WP_002935942.1 endonuclease MutS2 -
  APQ97_RS09955 (APQ97_09950) - 1982546..1983094 (-) 549 WP_002935945.1 CvpA family protein -
  APQ97_RS09960 (APQ97_09955) - 1983091..1983402 (-) 312 WP_002935948.1 hypothetical protein -
  APQ97_RS09965 (APQ97_09960) treR 1983460..1984173 (-) 714 WP_012774930.1 trehalose operon repressor Regulator
  APQ97_RS09970 (APQ97_09965) treP 1984406..1986400 (+) 1995 WP_053866399.1 PTS system trehalose-specific EIIBC component -
  APQ97_RS09975 (APQ97_09970) treC 1986481..1988106 (+) 1626 WP_053866400.1 alpha,alpha-phosphotrehalase -
  APQ97_RS09980 (APQ97_09975) - 1988520..1989644 (-) 1125 WP_002935956.1 LysM domain-containing protein -
  APQ97_RS09985 (APQ97_09980) - 1989987..1990970 (-) 984 WP_002935957.1 Gfo/Idh/MocA family oxidoreductase -
  APQ97_RS09990 (APQ97_09985) rnhC 1991055..1991945 (+) 891 WP_002935958.1 ribonuclease HIII -
  APQ97_RS09995 (APQ97_09990) lepB 1991955..1992584 (+) 630 WP_002935959.1 signal peptidase I -
  APQ97_RS10000 (APQ97_09995) - 1992648..1995137 (+) 2490 WP_014636769.1 ATP-dependent RecD-like DNA helicase -
  APQ97_RS12905 - 1995176..1997237 (-) 2062 Protein_1956 heavy metal translocating P-type ATPase -
  APQ97_RS10020 (APQ97_10015) - 1997410..1998219 (-) 810 WP_002935966.1 hypothetical protein -
  APQ97_RS10025 (APQ97_10020) - 1998313..1999341 (-) 1029 WP_002935967.1 ABC transporter substrate-binding protein -
  APQ97_RS10030 (APQ97_10025) - 1999372..2000163 (-) 792 WP_002935969.1 ABC transporter ATP-binding protein -
  APQ97_RS10035 (APQ97_10030) - 2000148..2000906 (-) 759 WP_002935973.1 ABC transporter permease -
  APQ97_RS10040 (APQ97_10035) - 2001128..2001889 (-) 762 WP_002935974.1 hypothetical protein -
  APQ97_RS10045 (APQ97_10040) - 2002104..2005043 (-) 2940 WP_002935975.1 right-handed parallel beta-helix repeat-containing protein -
  APQ97_RS10050 (APQ97_10045) - 2005163..2007049 (-) 1887 WP_002935976.1 DUF4838 domain-containing protein -
  APQ97_RS10055 (APQ97_10050) - 2007054..2008382 (-) 1329 WP_002935977.1 PTS sugar transporter subunit IIC -
  APQ97_RS10060 (APQ97_10055) - 2008574..2009773 (+) 1200 WP_002935978.1 ROK family protein -
  APQ97_RS10070 (APQ97_10065) - 2010056..2010694 (-) 639 WP_002935979.1 DNA repair protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=158228 APQ97_RS09965 WP_012774930.1 1983460..1984173(-) (treR) [Streptococcus suis strain NSUI060]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=158228 APQ97_RS09965 WP_012774930.1 1983460..1984173(-) (treR) [Streptococcus suis strain NSUI060]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment