Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   APQ97_RS02905 Genome accession   NZ_CP012911
Coordinates   576892..577695 (+) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 571892..582695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS02880 (APQ97_02870) - 572321..573019 (-) 699 WP_002935835.1 amino acid ABC transporter permease -
  APQ97_RS02885 (APQ97_02875) - 573034..573873 (-) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  APQ97_RS02890 (APQ97_02880) - 573884..574645 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  APQ97_RS02895 (APQ97_02885) micA 574839..575543 (+) 705 WP_002935840.1 response regulator YycF Regulator
  APQ97_RS02900 (APQ97_02890) micB 575536..576885 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  APQ97_RS02905 (APQ97_02895) vicX 576892..577695 (+) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  APQ97_RS12225 - 578431..578559 (-) 129 Protein_537 IS110 family transposase -
  APQ97_RS02915 (APQ97_02905) - 578737..579939 (-) 1203 WP_002935596.1 IS110 family transposase -
  APQ97_RS02920 (APQ97_02910) - 580178..580633 (+) 456 WP_002935846.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=158205 APQ97_RS02905 WP_002935843.1 576892..577695(+) (vicX) [Streptococcus suis strain NSUI060]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=158205 APQ97_RS02905 WP_002935843.1 576892..577695(+) (vicX) [Streptococcus suis strain NSUI060]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTTGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGTCATCTTTGTAATGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment