Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   APQ97_RS02040 Genome accession   NZ_CP012911
Coordinates   385832..386566 (+) Length   244 a.a.
NCBI ID   WP_002939204.1    Uniprot ID   A0A0K2E869
Organism   Streptococcus suis strain NSUI060     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 380832..391566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS02010 (APQ97_02000) - 381028..382692 (+) 1665 WP_002939193.1 DAK2 domain-containing protein -
  APQ97_RS02015 (APQ97_02005) tsaE 382793..383233 (+) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  APQ97_RS02020 (APQ97_02010) - 383226..383753 (+) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  APQ97_RS02025 (APQ97_02015) - 383750..384943 (+) 1194 WP_002939198.1 LCP family protein -
  APQ97_RS02030 (APQ97_02020) - 385052..385354 (-) 303 WP_002939199.1 hypothetical protein -
  APQ97_RS02035 (APQ97_02025) - 385356..385769 (-) 414 WP_002939203.1 HIT family protein -
  APQ97_RS02040 (APQ97_02030) pptA 385832..386566 (+) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  APQ97_RS02045 (APQ97_02035) - 386563..387603 (+) 1041 WP_013730555.1 ABC transporter permease -
  APQ97_RS02050 (APQ97_02040) - 387653..388447 (+) 795 WP_013730554.1 phosphotransferase family protein -
  APQ97_RS02055 (APQ97_02045) trmB 388444..389082 (+) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  APQ97_RS02060 (APQ97_02050) rimP 389340..389810 (+) 471 WP_002942369.1 ribosome maturation factor RimP -
  APQ97_RS02065 (APQ97_02055) nusA 389883..391025 (+) 1143 WP_004194726.1 transcription termination factor NusA -
  APQ97_RS02070 (APQ97_02060) - 391042..391338 (+) 297 WP_002942375.1 YlxR family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26760.04 Da        Isoelectric Point: 4.3999

>NTDB_id=158200 APQ97_RS02040 WP_002939204.1 385832..386566(+) (pptA) [Streptococcus suis strain NSUI060]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=158200 APQ97_RS02040 WP_002939204.1 385832..386566(+) (pptA) [Streptococcus suis strain NSUI060]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTATTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E869

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment