Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   APV63_RS06595 Genome accession   NZ_CP012905
Coordinates   1375863..1377176 (-) Length   437 a.a.
NCBI ID   WP_060473624.1    Uniprot ID   -
Organism   Helicobacter pylori strain 7C     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1370863..1382176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APV63_RS06565 (APV63_06560) nadC 1371328..1372149 (-) 822 WP_060473619.1 carboxylating nicotinate-nucleotide diphosphorylase -
  APV63_RS06570 (APV63_06565) nadA 1372149..1373159 (-) 1011 WP_060473620.1 quinolinate synthase NadA -
  APV63_RS06575 (APV63_06570) - 1373149..1373952 (-) 804 WP_060473621.1 phosphatidylserine decarboxylase -
  APV63_RS06580 (APV63_06575) - 1373946..1374452 (-) 507 WP_000953090.1 DUF6115 domain-containing protein -
  APV63_RS06585 (APV63_06580) - 1374465..1374959 (-) 495 WP_060473622.1 hypothetical protein -
  APV63_RS06590 (APV63_06585) mqnP 1374952..1375836 (-) 885 WP_060473623.1 menaquinone biosynthesis prenyltransferase MqnP -
  APV63_RS06595 (APV63_06590) comEC/comE3 1375863..1377176 (-) 1314 WP_060473624.1 ComEC/Rec2 family competence protein Machinery gene
  APV63_RS06600 (APV63_06595) - 1377173..1378639 (-) 1467 WP_000349729.1 replicative DNA helicase -
  APV63_RS06605 (APV63_06600) - 1378650..1380044 (-) 1395 WP_060473625.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  APV63_RS06610 (APV63_06605) crdS 1380047..1381249 (-) 1203 WP_080391131.1 copper-sensing histidine kinase CrdS -
  APV63_RS06615 (APV63_06610) crdR 1381215..1381856 (-) 642 WP_060473627.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50048.04 Da        Isoelectric Point: 9.8460

>NTDB_id=158176 APV63_RS06595 WP_060473624.1 1375863..1377176(-) (comEC/comE3) [Helicobacter pylori strain 7C]
MKDKTFQGAFELLATLKEYLVCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDKANALGINHLLAISGFHLGILSMSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQAIALS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLIIPTISVPSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=158176 APV63_RS06595 WP_060473624.1 1375863..1377176(-) (comEC/comE3) [Helicobacter pylori strain 7C]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCTCAAAGAATACCTGGTGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCGATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAACCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGACAGCGCCCATTCCAACGCTTTAGTGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAAAGCCAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
AAGCATGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTACTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTGTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCTTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGCGATCGCTTTAAGC
GCACTGGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTGGGGTCTTTGTTGGATCATA
TTTTAAGCATGCCTTTAATAATCCCTACGATTTCGGTTCCTTCACCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTAAGCGCACGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-381)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.11

100

0.961

Multiple sequence alignment