Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | APV63_RS00095 | Genome accession | NZ_CP012905 |
| Coordinates | 14096..14359 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584973.1 | Uniprot ID | G2MDJ4 |
| Organism | Helicobacter pylori strain 7C | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 9096..19359
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APV63_RS00070 (APV63_00070) | groES | 9393..9749 (-) | 357 | WP_000671934.1 | co-chaperone GroES | - |
| APV63_RS00075 (APV63_00075) | dnaG | 10025..11703 (+) | 1679 | Protein_9 | DNA primase | - |
| APV63_RS00080 (APV63_00080) | - | 11700..12752 (+) | 1053 | WP_060472745.1 | MnmA/TRMU family protein | - |
| APV63_RS00085 (APV63_00085) | - | 12841..13668 (+) | 828 | WP_060472746.1 | DUF5718 family protein | - |
| APV63_RS00090 (APV63_00090) | comB2 | 13815..14096 (+) | 282 | WP_001272690.1 | TrbC/VirB2 family protein | Machinery gene |
| APV63_RS00095 (APV63_00095) | comB3 | 14096..14359 (+) | 264 | WP_000584973.1 | hypothetical protein | Machinery gene |
| APV63_RS00100 (APV63_00100) | comB4 | 14361..16724 (+) | 2364 | WP_060472747.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| APV63_RS00110 (APV63_00105) | - | 17026..18366 (+) | 1341 | WP_042636800.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10034.13 Da Isoelectric Point: 9.5290
>NTDB_id=158161 APV63_RS00095 WP_000584973.1 14096..14359(+) (comB3) [Helicobacter pylori strain 7C]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=158161 APV63_RS00095 WP_000584973.1 14096..14359(+) (comB3) [Helicobacter pylori strain 7C]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAGTTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCGGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAGTTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCGGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |