Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   APV63_RS00090 Genome accession   NZ_CP012905
Coordinates   13815..14096 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain 7C     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8815..19096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APV63_RS00070 (APV63_00070) groES 9393..9749 (-) 357 WP_000671934.1 co-chaperone GroES -
  APV63_RS00075 (APV63_00075) dnaG 10025..11703 (+) 1679 Protein_9 DNA primase -
  APV63_RS00080 (APV63_00080) - 11700..12752 (+) 1053 WP_060472745.1 MnmA/TRMU family protein -
  APV63_RS00085 (APV63_00085) - 12841..13668 (+) 828 WP_060472746.1 DUF5718 family protein -
  APV63_RS00090 (APV63_00090) comB2 13815..14096 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  APV63_RS00095 (APV63_00095) comB3 14096..14359 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  APV63_RS00100 (APV63_00100) comB4 14361..16724 (+) 2364 WP_060472747.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  APV63_RS00110 (APV63_00105) - 17026..18366 (+) 1341 WP_042636800.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=158160 APV63_RS00090 WP_001272690.1 13815..14096(+) (comB2) [Helicobacter pylori strain 7C]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=158160 APV63_RS00090 WP_001272690.1 13815..14096(+) (comB2) [Helicobacter pylori strain 7C]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment