Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   AOY09_RS05590 Genome accession   NZ_CP012901
Coordinates   1215490..1216047 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain N15-01092     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1210490..1221047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY09_RS05575 (AOY09_01092) pilY1 1210582..1214073 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  AOY09_RS05580 (AOY09_01093) pilX 1214085..1214672 (-) 588 WP_034037187.1 type 4a pilus minor pilin PilX -
  AOY09_RS05585 (AOY09_01094) pilW 1214669..1215493 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  AOY09_RS05590 (AOY09_01095) pilV 1215490..1216047 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  AOY09_RS05595 (AOY09_01096) - 1216038..1216544 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  AOY09_RS05600 (AOY09_01097) - 1216650..1217159 (-) 510 WP_003161431.1 GspH/FimT family pseudopilin -
  AOY09_RS05605 (AOY09_01098) thiO 1217294..1218388 (+) 1095 WP_020750388.1 glycine oxidase ThiO -
  AOY09_RS05610 (AOY09_01099) pilR 1218434..1219771 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=158133 AOY09_RS05590 WP_003119423.1 1215490..1216047(-) (pilV) [Pseudomonas aeruginosa strain N15-01092]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=158133 AOY09_RS05590 WP_003119423.1 1215490..1216047(-) (pilV) [Pseudomonas aeruginosa strain N15-01092]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995

Multiple sequence alignment