Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   APS56_RS12075 Genome accession   NZ_CP012898
Coordinates   2924705..2926063 (+) Length   452 a.a.
NCBI ID   WP_054728496.1    Uniprot ID   A0A0P0D6R1
Organism   Pseudalgibacter alginicilyticus strain HZ22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2919705..2931063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APS56_RS12050 (APS56_12050) - 2920346..2921155 (-) 810 WP_054728481.1 glycogen/starch synthase -
  APS56_RS12055 (APS56_12055) panC 2921275..2922123 (+) 849 WP_054728484.1 pantoate--beta-alanine ligase -
  APS56_RS12060 (APS56_12060) panD 2922137..2922487 (+) 351 WP_054728487.1 aspartate 1-decarboxylase -
  APS56_RS12065 (APS56_12065) - 2922494..2923465 (+) 972 WP_054728489.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  APS56_RS12070 (APS56_12070) - 2923553..2924704 (+) 1152 WP_054728492.1 alpha/beta hydrolase-fold protein -
  APS56_RS12075 (APS56_12075) radA 2924705..2926063 (+) 1359 WP_054728496.1 DNA repair protein RadA Machinery gene
  APS56_RS12080 (APS56_12080) - 2926293..2931062 (+) 4770 WP_054728499.1 LamG-like jellyroll fold domain-containing protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49967.76 Da        Isoelectric Point: 7.2617

>NTDB_id=158102 APS56_RS12075 WP_054728496.1 2924705..2926063(+) (radA) [Pseudalgibacter alginicilyticus strain HZ22]
MAKVKTTFFCQSCGNQYAKWQGQCTACKQWNTIVEEVIQKQDKSGWKLPTSTTKRVSKPLLIKEIDSAKEARLDTFDGEF
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERINPENDNCYILTETKTQNIFKQI
EVLEPDIVIIDSIQTLHSDYIESSSGSISQIKECTTELIKFAKETATPVLLIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVFRILRAHKNRFGSTNELGIYEMQGSGLREVSNPSEILISKKDEELSGNVIAATLEGMRPLMIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFRLAAKDVFLNITGGITVDDPAIDLAVVAAILSSNEDVALQKDFCFAAEVGLSGEI
RPVQRAEQRILEAEKLGFSTIFVSKYNKISLKKTAIKIQLISKIEDLIEFVI

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=158102 APS56_RS12075 WP_054728496.1 2924705..2926063(+) (radA) [Pseudalgibacter alginicilyticus strain HZ22]
ATGGCAAAAGTAAAAACCACTTTTTTCTGCCAAAGTTGCGGAAATCAATACGCTAAATGGCAAGGGCAATGTACAGCTTG
TAAGCAATGGAATACGATTGTGGAAGAAGTTATTCAAAAGCAAGATAAAAGCGGTTGGAAATTACCAACATCTACCACAA
AGCGAGTTTCTAAACCATTATTAATTAAAGAAATTGATAGTGCTAAAGAGGCGAGGTTGGATACTTTTGATGGTGAATTT
AATAGAGTGCTTGGTGGTGGCATAGTACCTGGCTCTTTAATATTATTAGGGGGCGAACCAGGTATTGGTAAAAGTACATT
GCTACTTCAAATTTCATTAAAATTACCTTATAAAACTCTTTACGTTTCAGGAGAAGAAAGCCAAAAGCAAATAAAAATGC
GTGCCGAACGCATTAATCCTGAAAACGATAATTGCTATATTTTAACTGAAACTAAAACACAAAATATATTTAAACAAATT
GAAGTTTTGGAGCCAGATATTGTTATTATCGATTCCATTCAAACGCTTCATAGCGATTATATAGAATCCTCTTCAGGAAG
TATTTCGCAAATAAAAGAGTGTACTACAGAACTTATAAAATTTGCAAAAGAAACTGCGACCCCGGTTTTATTAATTGGTC
ATATTACTAAAGATGGTAACATTGCAGGGCCTAAAATTTTAGAACATATGGTGGATACGGTTTTACAATTTGAAGGTGAC
CGCAATCACGTGTTTAGAATTTTAAGAGCTCATAAAAATAGATTTGGTTCTACAAATGAATTAGGTATTTATGAAATGCA
AGGCTCTGGTTTAAGAGAAGTTTCTAATCCTTCCGAAATTTTAATTTCGAAAAAAGACGAAGAACTTTCAGGTAATGTAA
TTGCAGCAACTTTAGAAGGCATGCGTCCACTAATGATTGAAGTGCAAGCTTTGGTTAGTACGGCTGTTTACGGTACGCCT
CAGCGTTCAGCGACAGGGTTTAATGCTAAACGGCTTAATATGTTGTTGGCGGTTTTAGAAAAGCGAGCTGGCTTTCGATT
AGCTGCTAAAGATGTGTTTTTGAATATTACGGGAGGTATTACTGTAGATGATCCAGCTATTGATTTAGCCGTTGTAGCAG
CCATTTTATCTTCAAATGAAGATGTTGCTTTGCAAAAAGATTTTTGTTTTGCTGCTGAGGTTGGATTGTCTGGCGAAATT
CGACCAGTACAACGTGCTGAACAGCGTATTTTAGAAGCTGAAAAACTTGGTTTTTCAACTATTTTTGTGTCTAAATACAA
TAAAATTTCACTAAAAAAAACGGCTATTAAAATTCAATTAATTTCTAAAATTGAAGATTTAATTGAGTTTGTTATCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(327-427)

AAA domain (AAA_25)

(81-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P0D6R1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.661

98.009

0.487
  radA Bacillus subtilis subsp. subtilis str. 168

50.698

95.133

0.482
  radA Streptococcus pneumoniae R6

50.585

94.469

0.478
  radA Streptococcus pneumoniae TIGR4

50.585

94.469

0.478
  radA Streptococcus mitis NCTC 12261

50.585

94.469

0.478
  radA Streptococcus pneumoniae D39

50.585

94.469

0.478
  radA Streptococcus pneumoniae Rx1

50.585

94.469

0.478

Multiple sequence alignment