Detailed information NTG0158047

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A9E94_RS06215
• Genome accession: NZ_CP015954
• Coordinates: 1382787..1383812 (+)
• Length: 341 a.a.
• NCBI ID: WP_015444568.1
• Uniprot ID: Q9S4T1
• Organism: Legionella pneumophila strain E7_O
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1377787..1388812

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9E94_RS06185 (A9E94_06185)	-	1378221..1378538 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
A9E94_RS06190 (A9E94_06190)	-	1378575..1378946 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
A9E94_RS06195 (A9E94_06195)	-	1378994..1380718 (-)	1725	WP_010947011.1	NAD-dependent malic enzyme	-
A9E94_RS06200 (A9E94_06200)	-	1380798..1381181 (+)	384	WP_010947012.1	hypothetical protein	-
A9E94_RS06205 (A9E94_06205)	surE	1381184..1381939 (+)	756	WP_010947013.1	5'/3'-nucleotidase SurE	-
A9E94_RS06210 (A9E94_06210)	-	1381958..1382701 (+)	744	WP_010947014.1	peptidoglycan DD-metalloendopeptidase family protein	-
A9E94_RS06215 (A9E94_06215)	rpoS	1382787..1383812 (+)	1026	WP_015444568.1	RNA polymerase sigma factor RpoS	Regulator
A9E94_RS06220 (A9E94_06220)	hmgA	1383915..1385165 (-)	1251	WP_010947016.1	homogentisate 1,2-dioxygenase	-
A9E94_RS06225 (A9E94_06225)	-	1385311..1386054 (+)	744	WP_010947017.1	YebC/PmpR family DNA-binding transcriptional regulator	-
A9E94_RS06230 (A9E94_06230)	ruvC	1386054..1386578 (+)	525	WP_010947018.1	crossover junction endodeoxyribonuclease RuvC	-
A9E94_RS06235 (A9E94_06235)	ruvA	1386575..1387174 (+)	600	WP_010947019.1	Holliday junction branch migration protein RuvA	-
A9E94_RS06240 (A9E94_06240)	-	1387224..1387544 (+)	321	WP_010947020.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39449.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=158047 A9E94_RS06215 WP_015444568.1 1382787..1383812(+) (rpoS) [Legionella pneumophila strain E7_O]
MQDDEEPIKDKEFKEEEWSEPDDESLLSEEDVEPDIEKMEEELDELPEFTDDETFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=158047 A9E94_RS06215 WP_015444568.1 1382787..1383812(+) (rpoS) [Legionella pneumophila strain E7_O]
ATGCAAGATGATGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGAATCTCTGTT
GTCAGAAGAAGATGTTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAA
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGTTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTGCCTCTTCTTGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCGTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

3D structure

• AlphaFold DB: Q9S4T1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548