Detailed information NTG0158037

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOT11_RS09650
• Genome accession: NZ_CP012881
• Coordinates: 2053363..2054355 (+)
• Length: 330 a.a.
• NCBI ID: WP_017420278.1
• Uniprot ID: -
• Organism: Vibrio vulnificus NBRC 15645 = ATCC 27562
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2048363..2059355

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOT11_RS09615 (AOT11_16650)	ftsB	2048394..2048675 (+)	282	WP_017420271.1	cell division protein FtsB	-
AOT11_RS09620 (AOT11_16655)	ispD	2048675..2049388 (+)	714	WP_017420272.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOT11_RS09625 (AOT11_16660)	ispF	2049385..2049861 (+)	477	WP_017420273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOT11_RS09630 (AOT11_16665)	truD	2049897..2050940 (+)	1044	WP_026050393.1	tRNA pseudouridine(13) synthase TruD	-
AOT11_RS09635 (AOT11_16670)	surE	2050946..2051713 (+)	768	WP_017420275.1	5'/3'-nucleotidase SurE	-
AOT11_RS09640 (AOT11_16675)	-	2051716..2052342 (+)	627	WP_017420276.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AOT11_RS09645 (AOT11_16680)	-	2052386..2053282 (+)	897	WP_049797988.1	peptidoglycan DD-metalloendopeptidase family protein	-
AOT11_RS09650 (AOT11_16685)	rpoS	2053363..2054355 (+)	993	WP_017420278.1	RNA polymerase sigma factor RpoS	Regulator
AOT11_RS09655 (AOT11_16690)	mutS	2054431..2056992 (-)	2562	WP_026050395.1	DNA mismatch repair protein MutS	-
AOT11_RS09660 (AOT11_16695)	pncC	2057076..2057579 (+)	504	WP_017420280.1	nicotinamide-nucleotide amidase	-
AOT11_RS09665 (AOT11_16700)	recA	2057712..2058761 (+)	1050	WP_039470153.1	recombinase RecA	Machinery gene
AOT11_RS09670 (AOT11_16705)	recX	2058871..2059332 (+)	462	WP_038964353.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38011.07 Da
• Isoelectric Point: 4.4761

>NTDB_id=158037 AOT11_RS09650 WP_017420278.1 2053363..2054355(+) (rpoS) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=158037 AOT11_RS09650 WP_017420278.1 2053363..2054355(+) (rpoS) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGCGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTGCGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGTATTAGTTCTGTTGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCAAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833