Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AOT11_RS00400 Genome accession   NZ_CP012881
Coordinates   97793..99214 (+) Length   473 a.a.
NCBI ID   WP_017419946.1    Uniprot ID   -
Organism   Vibrio vulnificus NBRC 15645 = ATCC 27562     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92793..104214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT11_RS00375 (AOT11_07560) cobC 93475..94113 (-) 639 WP_017419952.1 alpha-ribazole phosphatase -
  AOT11_RS00380 (AOT11_07565) cobU 94123..94683 (-) 561 WP_026050249.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  AOT11_RS00385 (AOT11_07570) - 94686..95453 (-) 768 WP_017419950.1 adenosylcobinamide-GDP ribazoletransferase -
  AOT11_RS00390 (AOT11_07575) cobT 95455..96483 (-) 1029 WP_017419949.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AOT11_RS00395 (AOT11_07580) - 97021..97719 (+) 699 WP_017419947.1 oxidoreductase -
  AOT11_RS00400 (AOT11_07585) sbcB 97793..99214 (+) 1422 WP_017419946.1 exodeoxyribonuclease I Machinery gene
  AOT11_RS00405 (AOT11_07590) - 99260..99631 (+) 372 WP_044666526.1 CidA/LrgA family protein -
  AOT11_RS00410 (AOT11_07595) - 99634..100311 (+) 678 WP_017419944.1 LrgB family protein -
  AOT11_RS00415 (AOT11_07600) - 100623..101015 (+) 393 WP_017419943.1 SulA-like leucine-rich domain-containing protein -
  AOT11_RS00420 (AOT11_07605) - 101218..102321 (+) 1104 WP_017419942.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  AOT11_RS00425 (AOT11_07610) - 102415..102804 (-) 390 WP_017419941.1 hypothetical protein -
  AOT11_RS00430 (AOT11_07615) - 103044..103811 (-) 768 WP_017419940.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54757.99 Da        Isoelectric Point: 5.1699

>NTDB_id=158008 AOT11_RS00400 WP_017419946.1 97793..99214(+) (sbcB) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDDNFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENATN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=158008 AOT11_RS00400 WP_017419946.1 97793..99214(+) (sbcB) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGCCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGACAACTTCAATATCATCGGCGAACCATTGGTAATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCGCTCATTACCGGAATTACGCCGCAAAAAGCGCAGAAAGAAGGCTTACCAGAGCCA
GAATTCATCGCTAAAATCCACGCAGAGTTGTCGCGCCCGAACACCACGAGCCTCGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACGCGTTACACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCGGTAGCGAATGGCATTGAACACAGTAACGCGCATGATGCGATGGCCGATGTAATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATTGTGCCATTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTCGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACACGTCATGATGAGCTGGGTGACTTACTGCCTG
TGCCAGTTAAACTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCCGCCAAAACCCTCACAGCGGAGAACGCCACCAAT
ATTGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTTGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACTCACCTTGCCGCTTTGGACATCACGTTCAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment