Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AO080_RS06360 Genome accession   NZ_CP012873
Coordinates   1370887..1372701 (+) Length   604 a.a.
NCBI ID   WP_060654625.1    Uniprot ID   -
Organism   Weissella cibaria strain CH2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1365887..1377701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AO080_RS06335 (AO080_06345) - 1366137..1366454 (+) 318 WP_060654617.1 PTS sugar transporter subunit IIB -
  AO080_RS06340 (AO080_06350) - 1366500..1366823 (+) 324 WP_010372502.1 PTS lactose/cellobiose transporter subunit IIA -
  AO080_RS06345 (AO080_06355) - 1366829..1368280 (+) 1452 WP_060654619.1 6-phospho-beta-glucosidase -
  AO080_RS06350 (AO080_06360) - 1368347..1369711 (+) 1365 WP_060654622.1 PTS sugar transporter subunit IIC -
  AO080_RS06355 (AO080_06365) - 1369720..1370847 (+) 1128 WP_150116705.1 competence protein CoiA family protein -
  AO080_RS06360 (AO080_06370) pepF 1370887..1372701 (+) 1815 WP_060654625.1 oligoendopeptidase F Regulator
  AO080_RS06365 (AO080_06375) - 1372791..1373510 (-) 720 WP_043709532.1 MIP/aquaporin family protein -
  AO080_RS06370 (AO080_06380) - 1373818..1374207 (+) 390 WP_010372520.1 DUF948 domain-containing protein -
  AO080_RS06375 (AO080_06385) - 1374223..1374795 (+) 573 WP_010372524.1 hypothetical protein -
  AO080_RS06380 (AO080_06390) ccpA 1374854..1375855 (-) 1002 WP_060654627.1 catabolite control protein A -
  AO080_RS06385 (AO080_06395) - 1376107..1377207 (+) 1101 WP_043711534.1 Xaa-Pro peptidase family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67749.61 Da        Isoelectric Point: 4.2971

>NTDB_id=157998 AO080_RS06360 WP_060654625.1 1370887..1372701(+) (pepF) [Weissella cibaria strain CH2]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFAQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAQGVPL
TADVLDEAYGELNRRYYGPALKFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEERLNEFEALVAELAAE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=157998 AO080_RS06360 WP_060654625.1 1370887..1372701(+) (pepF) [Weissella cibaria strain CH2]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCCGAGTCAATGACTTGGAATTTGCAGACGATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGACTTCTTCGCCCAATCAGCAACGACGTCAG
GTACAGATTTGTACAATGCGTTGCAATACGGCTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAGTCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCGGCACGTGTTTCTGC
GGCCATTGCATTCTTTGACCCAGCTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAACCTAAGC
TGGGTGCGTACAAGCATTACTTCGAGAGTATTCTGACACAACAAGGTCATGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCCGGGGATGTTTTTGGGGCTTCAGAACGGACGTTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTGTTGGAGTCGACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATCGCAAGTCACGTG
AAGGGTCATAACTTTATGGCTGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTTGCGGAAGTAAATGAGGCGTTGCCATTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGATGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGTGAACCTGACTTTACGATTGATTACGAA
TCTGCTCAGGCTGAAGCATTAAAGGCGTTGGCACCATTGGGCGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCTTACTCGGGTGGTTCATACGATACAAATCCATTCA
TTTTGCTGAACTGGGTCGATAACTTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCGTATTTG
ACTCGTCAAAATCAACCATACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCGTATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACGGTCTTCCGTCAAACCCAATTTGCAGAGTTTGAGCAATGGATGCACGTTACGGATGCGCAAGGCGTGCCATTG
ACTGCTGATGTTTTGGATGAGGCCTATGGTGAGCTTAACCGACGTTACTACGGCCCAGCCTTGAAGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTATTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCGA
CGGCAATGGCGGACAAGATTTTGACTGAAGGGGCACCGGCTGTGGCAGCTTACAAGGAATACTTGAAGGCTGGATCATCT
GCATTCCCAATCGATGTGATGAAGAAGGCTGGGCTTGATATGACTAAGCCGGATTACTTGCGTGACACATTCAAAGTGTT
CGAAGAACGCTTGAACGAATTTGAAGCGTTGGTCGCAGAATTAGCTGCTGAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-184)

Peptidase family M3 (Peptidase_M3)

(205-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.469

97.848

0.523

Multiple sequence alignment