Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   AOY38_RS10720 Genome accession   NZ_CP012832
Coordinates   2269471..2271777 (+) Length   768 a.a.
NCBI ID   WP_060492346.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-G     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2264471..2276777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY38_RS10700 (AOY38_10690) - 2264740..2265234 (-) 495 WP_010873248.1 DUF1830 domain-containing protein -
  AOY38_RS10705 (AOY38_10695) - 2265380..2266975 (+) 1596 WP_010873249.1 photosystem II high light acclimation radical SAM protein -
  AOY38_RS10710 (AOY38_10700) - 2267016..2268053 (-) 1038 WP_010873250.1 RNA polymerase sigma factor, RpoD/SigA family -
  AOY38_RS10715 (AOY38_10705) era 2268514..2269461 (+) 948 WP_010873251.1 GTPase Era -
  AOY38_RS10720 (AOY38_10710) pilL-C 2269471..2271777 (+) 2307 WP_060492346.1 response regulator Machinery gene
  AOY38_RS10725 (AOY38_10715) - 2271777..2274905 (+) 3129 WP_010873253.1 alpha-mannosidase -
  AOY38_RS10730 (AOY38_10720) - 2274898..2275782 (+) 885 WP_010873254.1 ABC transporter permease -
  AOY38_RS10735 (AOY38_10725) - 2275830..2276315 (+) 486 WP_010873255.1 MEKHLA domain-containing protein -

Sequence

Protein


Download         Length: 768 a.a.        Molecular weight: 84997.39 Da        Isoelectric Point: 4.2145

>NTDB_id=157839 AOY38_RS10720 WP_060492346.1 2269471..2271777(+) (pilL-C) [Synechocystis sp. PCC 6803 substr. GT-G]
MTSDPNPAQAFENWFEEEEGDDAFTSLIAGEETNSGIEELDFGDLFEGEPTVIQGEGFGSPSSGEEDPPVRMTLDFNSPE
AELDALFTDEDAPTTAIDPFESSSWLEIDQMMEADPLASIPETNAPAYQTAGGLDDNDLAELQDLLGVGDVEPAITNPGL
HSFAGADRVTPLTNEVLLFAAIDDLDGLINAPVLDEEFSFTELETLIDTPAPKSFATISHPFRLPVAMEEDEDEFKDLEA
LLEQADSSLGGGIAGMGGARLPARPRQVKSRSFEQTMRVTIKQLDNLSNLIGELVVKRNRLEQDQERLRQFLDNLLNQAQ
NLSDVGGRMQDLYERTLLEGALLASRSTNSRHHSSKTTYPDARITASSSSTMNDQPLDALEMDRFTGFHLLSQEMIELIV
RVRESASDIQYLVDETDQVARTLRQVTTQLQEGMTKSRMVPFTQTADRLRTDSSGGLWRKTLTPTVNEVHMDPTVLIVDD
SITVRELLSLSFKKAGFRVEQARDGQEAWDQLKSGLPCDLVFCDIEMPRKNGLELLSELQADEELSSIPVALLTSRGADR
HRKVAAKLGATGYFTKPYTEKDILDAANRMLNGEVLLPGSTRKTNSILSRFKKARGNFSEEAPTIVRSNPGTLRSTVLII
DDSVMVREMLSMTFKKADYHTETARDGQDAWEKLKSGLPCDLILCDIEMPRMNGLELLERIQEDPNLSRIPVAMITSRGA
QKMQRMAAEKGAKGYFVKPYIEETLLEASQRLIRGEVLLDLAALSADE

Nucleotide


Download         Length: 2307 bp        

>NTDB_id=157839 AOY38_RS10720 WP_060492346.1 2269471..2271777(+) (pilL-C) [Synechocystis sp. PCC 6803 substr. GT-G]
ATGACTAGCGATCCCAATCCAGCCCAGGCATTTGAAAATTGGTTTGAGGAGGAAGAGGGGGATGACGCCTTTACTTCCCT
CATTGCCGGTGAGGAGACTAACAGTGGGATTGAAGAACTGGATTTTGGCGATTTATTTGAGGGAGAACCCACCGTCATCC
AGGGTGAAGGGTTTGGCTCGCCGTCCTCTGGAGAGGAAGATCCGCCGGTCCGCATGACCCTAGATTTTAATTCCCCGGAA
GCGGAACTAGACGCTCTCTTTACCGATGAGGATGCCCCCACAACGGCGATCGATCCCTTTGAAAGCTCCAGTTGGCTAGA
AATCGACCAGATGATGGAAGCTGATCCCCTGGCTTCCATTCCTGAGACCAATGCCCCCGCTTACCAGACCGCTGGTGGCC
TAGATGACAATGACCTAGCCGAATTGCAGGATTTACTAGGAGTAGGGGACGTCGAGCCCGCCATTACCAACCCTGGTTTG
CACTCCTTTGCTGGGGCTGATCGGGTAACTCCATTGACAAATGAGGTCCTGCTTTTTGCGGCGATCGATGACTTAGACGG
ATTGATTAATGCCCCTGTCCTGGACGAAGAATTTTCCTTTACCGAACTAGAGACTTTAATCGATACCCCAGCCCCAAAAT
CTTTTGCCACCATCAGCCATCCTTTTCGTTTACCGGTGGCTATGGAGGAAGACGAGGATGAATTCAAAGACTTAGAAGCA
TTATTAGAGCAAGCGGATAGCAGTCTGGGGGGGGGCATAGCCGGCATGGGAGGGGCTCGGCTGCCCGCTCGACCTAGGCA
GGTTAAATCCCGTAGTTTTGAGCAAACTATGCGGGTGACCATCAAACAACTTGACAACCTCAGTAACCTGATCGGGGAGC
TAGTGGTCAAACGGAATCGCCTTGAACAGGATCAGGAGCGTTTACGACAGTTTTTGGATAATCTGCTCAACCAAGCCCAA
AACCTCAGCGATGTGGGGGGGCGGATGCAGGATTTATACGAAAGAACTTTGTTGGAAGGGGCCCTTTTAGCCAGCCGCAG
CACCAACAGCCGTCACCACTCCTCGAAAACCACCTACCCCGATGCCAGGATCACGGCCTCTAGTTCCTCGACCATGAATG
ACCAGCCTTTGGATGCGCTGGAAATGGATCGATTTACCGGATTTCACCTGCTTTCCCAGGAGATGATCGAGTTAATTGTG
CGGGTGCGGGAATCTGCGTCGGATATTCAGTACTTGGTGGACGAGACAGATCAGGTGGCCCGAACCCTCCGGCAGGTGAC
TACGCAGTTACAGGAGGGAATGACCAAATCTCGCATGGTGCCCTTTACCCAAACCGCCGATCGCCTCCGCACTGACAGCA
GTGGTGGACTATGGCGCAAAACCCTGACCCCCACGGTCAATGAAGTCCACATGGACCCCACTGTGCTAATTGTGGACGAC
TCCATCACGGTGCGGGAATTGCTCTCCCTCAGTTTCAAAAAAGCTGGTTTCCGGGTAGAACAGGCTAGGGATGGACAGGA
AGCCTGGGATCAACTCAAGTCTGGTCTGCCCTGTGACTTGGTCTTCTGTGACATTGAAATGCCCCGCAAAAATGGCTTGG
AATTGTTATCGGAACTGCAAGCAGACGAAGAACTATCTTCCATTCCAGTGGCCTTACTCACTTCCAGGGGAGCCGATCGC
CATCGTAAAGTGGCGGCCAAGCTGGGGGCAACGGGCTATTTCACCAAGCCCTATACAGAAAAAGACATTTTGGACGCGGC
CAACCGGATGTTGAATGGGGAGGTGTTACTCCCCGGCAGTACCCGCAAAACTAATTCCATTCTTTCTCGCTTCAAAAAAG
CCCGAGGCAACTTCTCCGAAGAAGCTCCCACCATTGTGAGAAGTAATCCAGGTACCCTACGTTCGACGGTGTTAATTATT
GATGACTCGGTGATGGTGCGGGAAATGCTTTCTATGACCTTTAAAAAAGCCGATTACCATACAGAAACTGCTCGGGATGG
CCAGGATGCCTGGGAAAAACTCAAGTCTGGCTTACCCTGTGATTTGATTCTCTGTGACATTGAAATGCCCCGCATGAACG
GTCTGGAATTATTGGAGCGCATTCAAGAAGATCCCAACCTTTCCCGTATTCCAGTGGCCATGATTACCTCCCGGGGAGCA
CAAAAAATGCAGCGCATGGCAGCAGAAAAAGGCGCCAAGGGATACTTTGTGAAGCCCTACATTGAGGAAACTTTATTGGA
AGCCAGTCAAAGGTTGATAAGGGGAGAAGTGTTGCTAGATTTGGCCGCTCTAAGTGCAGACGAGTAA

Domains

Predicted by InterproScan.

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(275-331)

Response regulator receiver domain (Response_reg)

(475-587)

Response regulator receiver domain (Response_reg)

(637-748)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

99.777

58.464

0.583

Multiple sequence alignment